{"bugs":[{"bugid":625808,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"sci-biology\/wise-2.4.0_alpha will not build with USE doc"},{"bugid":652030,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/wise Please set VARTEXFONTS=${T}\/fonts to prevent sandbox violations"},{"bugid":741202,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/wise-2.4.0_alpha-r1 does not respect LDFLAGS"},{"bugid":809725,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/wise-2.4.0_alpha-r1 calls ar directly"},{"bugid":818616,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/wise-2.4.0_alpha-r1 - ! LaTeX Error: Bad math environment delimiter."},{"bugid":883891,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/wise-2.4.0_alpha-r1 - int (const char , const char ); ISO C99 and later do not support"},{"bugid":886065,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/wise-2.4.0_alpha-r1 fails to compile (CLANG-STRICTER-SYSTEM): compressed_protein_index.dy:223:10: error: incompatible pointer to integer conversion returning void from a function with result type boolean (aka int) [-Wint-conversion]"},{"bugid":946406,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/wise-2.4.0_alpha-r1 fails to compile: gnuregex.c:1175:20: error: too many arguments to function at_begline_loc_p"},{"bugid":951567,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"sci-biology\/wise: tree clean request"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3d4eaa9a9790c5956e454eda213b853490da09f7","committime":"2021-08-22T19:51:19","packageid":55024,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jakov.smolic@sartura.hr","authorname":"Jakov Smolic","body":"Signed-off-by: Jakov Smolic \nSigned-off-by: David Seifert ","commitid":"6a6b5309daa23e0dbb6318512e68e81ffa668c81","committime":"2021-08-22T19:37:25","packageid":55024,"repoid":1,"summary":"sci-biology\/wise: Port to EAPI 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1dff16feef2bb9d2ccf6e0e5f2a4f87e02f7a94d","committime":"2021-04-18T06:22:06","packageid":55024,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2\nSigned-off-by: Sam James ","commitid":"1a24b28340bc6bb4177f07fc097b829b5a9c4c17","committime":"2021-04-16T13:57:02","packageid":55024,"repoid":1,"summary":"sci-biology\/wise: eutils->epatch"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"27938a2175ae18e670f4aee7ed284e2dcdf96a8c","committime":"2017-12-10T00:13:35","packageid":55024,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Closes: https:\/\/bugs.gentoo.org\/620622","commitid":"2e1af23d4b6f4751d84eb7ab519b090db71c83d7","committime":"2017-12-09T23:27:11","packageid":55024,"repoid":1,"summary":"sci-biology\/wise: Move patches to a distfile"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":55024,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":55024,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e276789fbac1f63ee217f1146713347048bdbfe3","committime":"2017-02-06T21:38:43","packageid":55024,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/3856","commitid":"dd0f0064b61d32e2654694c21f9faacb6e7bb72c","committime":"2017-02-06T20:48:00","packageid":55024,"repoid":1,"summary":"sci-biology\/wise: Remove alpha ia64 sparc from KEYWORDS"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":55024,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":55024,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":55024,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":353,"description":"Sequence analysis using profile hidden Markov models","ebuildids":[722370],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"hmmer","packageid":43083}],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":722370,"firstseen":"2021-08-22T21:03:07.111106","license":"BSD","moddate":"2026-03-22T20:20:57","packageid":55024,"repoid":1,"slot":"0","uses":["doc"],"version":"2.4.0_alpha-r1"}],"masks":[],"package":{"categoryid":353,"description":"Intelligent algorithms for DNA searches","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"wise","packageid":55024},"rdependencies":[{"block":false,"categoryid":353,"description":"Sequence analysis using profile hidden Markov models","ebuildids":[722370],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"hmmer","packageid":43083}],"repos":[{"branch":"master","lastcommit":"1f58741385367db432e79500a838ced67b2a773d","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/www.ebi.ac.uk\/Wise2\/"],"uses":[{"description":"Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally","isdefault":false,"use":"doc"}]}