{"bugs":[{"bugid":928064,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/yass-1.14-r3 - \/...\/ld: final link failed: bad value"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f03885f5eb90807f92ae30d5b6f3401c7e8d790f","committime":"2025-02-24T21:33:31","packageid":55912,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jy6x2b32pie9@yahoo.com","authorname":"NHOrus","body":"Add missing declaration to the lowmem-only header.\n\nCloses: https:\/\/bugs.gentoo.org\/919215\nSigned-off-by: NHOrus \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/40728\nSigned-off-by: Sam James ","commitid":"f2e3846df3b8e350bd49941d5e0657e0c8c9f96b","committime":"2025-02-24T10:39:33","packageid":55912,"repoid":1,"summary":"sci-biology\/yass: Fix build with USE=lowmem"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"9c0d6a2f4104ddf4c5e8e063b44c0345273c33ae","committime":"2024-12-31T14:33:45","packageid":55912,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jy6x2b32pie9@yahoo.com","authorname":"NHOrus","body":"It's janky and causes build failures\n\nBug: https:\/\/bugs.gentoo.org\/946814\nSigned-off-by: NHOrus \nSigned-off-by: Sam James ","commitid":"d0977ceabf102fd8b7d570902a5feb516f71016c","committime":"2024-12-30T17:07:08","packageid":55912,"repoid":1,"summary":"sci-biology\/yass: Remove USE=dmalloc"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"af6f0e8ef0bcb907ba1d0760fbc87f04990100a3","committime":"2022-07-07T20:01:37","packageid":55912,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"be4181e663d6cd69f74b30e67f6735a653889dcd","committime":"2022-07-07T19:57:15","packageid":55912,"repoid":1,"summary":"sci-biology\/yass: update EAPI 6 -> 8"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":55912,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":55912,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"bfea4b62d4886ed177225ccb7663a8e399e16e05","committime":"2016-09-03T23:22:37","packageid":55912,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.3.0","commitid":"4a567c8fd34191f0fd1752e8da2a07143b5b7d85","committime":"2016-09-03T22:35:56","packageid":55912,"repoid":1,"summary":"sci-biology\/yass: remove deprecated EAPI ebuilds"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.3.0","commitid":"49f9e4a0c388e395c0cbf781ea7e3a9db8cc761b","committime":"2016-09-03T22:33:38","packageid":55912,"repoid":1,"summary":"sci-biology\/yass: Port to EAPI=6"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":55912,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":55912,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":55912,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":855088,"firstseen":"2025-02-24T21:36:05.353452","license":"GPL-2","moddate":"2026-03-22T20:20:57","packageid":55912,"repoid":1,"slot":"0","uses":["lowmem","threads"],"version":"1.14-r4"}],"masks":[],"package":{"categoryid":353,"description":"Genomic similarity search with multiple transition constrained spaced seeds","firstseen":"2010-06-18T14:37:58.731517","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"yass","packageid":55912},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/bioinfo.lifl.fr\/yass\/"],"uses":[{"description":"Build for environments with low amounts of memory","isdefault":false,"packageid":55912,"use":"lowmem"},{"description":"Add threads support for various packages. Usually pthreads","isdefault":false,"use":"threads"}]}