{"bugs":[{"bugid":968461,"firstseen":"2026-01-06T15:50:27.985556","severity":"normal","status":"CONFIRMED","summary":"sci-chemistry\/GromacsWrapper-0.9.1 - [sphinx-9] ERROR: sci-chemistry\/GromacsWrapper-0.9.1::gentoo failed (install phase):"}],"categories":[{"categoryid":450,"name":"dev-lang","summary":"The dev-lang category contains various programming language implementations and related tools."},{"categoryid":336,"name":"dev-python","summary":"The dev-python category contains packages whose primary purpose is to provide Python modules, extensions and bindings, as well as tools and utilities useful for development in the Python programming language."},{"categoryid":416,"name":"sci-chemistry","summary":"The sci-chemistry category contains software that can be used in chemistral scientific environments."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8f97850d19bec76b6452f694069b6dff2c9573dc","committime":"2025-04-03T10:20:20","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Closes: https:\/\/bugs.gentoo.org\/952161\nSigned-off-by: Alexey Shvetsov ","commitid":"b64e85fb80f47f5a12ca90947069eb433d212540","committime":"2025-04-03T10:07:58","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: add 0.9.1, drop 0.8.5"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e38a0afe2662b66d218e7b8b1a22f434868db0ba","committime":"2024-09-25T09:49:03","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"fkobi@pm.me","authorname":"Filip Kobierski","body":"Signed-off-by: Filip Kobierski \nSigned-off-by: Andrew Ammerlaan ","commitid":"9520a81d102517512e60f38ed5805a8ebc0e3ea0","committime":"2024-09-24T17:49:35","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: remove empty variables"},{"authoremail":"fkobi@pm.me","authorname":"Filip Kobierski","body":"Signed-off-by: Filip Kobierski \nSigned-off-by: Andrew Ammerlaan ","commitid":"655a0855c061d8f2156f22f34aa9005d675538c3","committime":"2024-09-23T16:28:39","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: drop 0.8.4"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"80195d92c30b7db71df4a49ef61733bb71a42f3b","committime":"2023-09-17T16:31:35","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Signed-off-by: Pacho Ramos ","commitid":"0e8702a1696810a53773169ab26bf212fc7b7de0","committime":"2023-09-17T16:10:00","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: drop 0.8.2"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Signed-off-by: Pacho Ramos ","commitid":"dde2c49ecaeccc7ce8fd503f2aa14b2e9247ea5c","committime":"2023-09-17T16:09:55","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: add 0.8.5"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2ec0f6a659bcfbc109a01b3afc419a1cf4abb0e8","committime":"2023-06-19T14:16:52","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Signed-off-by: Pacho Ramos ","commitid":"ea0092118654e1e058a6d2b7f35687885e176ec8","committime":"2023-06-19T13:48:34","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: add 0.8.4"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"92399fb207bfe5f7be9ed5e58f6e4c6d34aa8d40","committime":"2023-05-04T13:03:01","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Closes: https:\/\/bugs.gentoo.org\/897192\nSigned-off-by: Pacho Ramos ","commitid":"1800cfef1a9785b74a109c53af70e7215ad7f84b","committime":"2023-05-04T12:57:34","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: enable py3.11"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8d0ebee607de5c63d747980fbeb0806c193a29c9","committime":"2023-01-14T13:02:17","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"ed468028e725c9580a7b2ee02d6b7b9375f7a0b2","committime":"2023-01-14T12:51:19","packageid":60581,"repoid":1,"summary":"*\/*: remove py3.8 from PYTHON_COMPAT"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"943a1a28ae6150702421a720c8c36ffc5132d380","committime":"2022-10-29T15:17:08","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Signed-off-by: Alexey Shvetsov ","commitid":"535b60e5c35c65b15ddcd66739871003be0cb837","committime":"2022-10-29T15:03:32","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: add 0.8.2, drop 0.8.0-r1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"d13e41778fc9701e453d5c62f36bd77dc58d3cc2","committime":"2022-01-13T16:21:45","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Package-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Alexey Shvetsov ","commitid":"4fa2a7edeaed03114132fc416636847b1a3a46c9","committime":"2022-01-13T16:13:26","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Drop eutils.eclass"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Package-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Alexey Shvetsov ","commitid":"772a32fd8ccbe71fca4b23bb12a74356285cb38b","committime":"2022-01-13T16:12:31","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Add py 3.10"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"85c134155351ccce0c3f548150ce4fc7c14ef639","committime":"2021-04-17T20:20:06","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Package-Manager: Portage-3.0.18, Repoman-3.0.3\nSigned-off-by: Pacho Ramos ","commitid":"0a8916104428974d31df9a68677f9b6d1f80355a","committime":"2021-04-17T20:07:58","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Support newer python versions"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"9a42bf8cb751ca452b155ea4360b780a32e5aaa4","committime":"2021-04-12T01:22:18","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"939a776774f2cfa7bc4d817c4e0353920280db70","committime":"2021-04-12T00:31:05","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: fix RDEPEND typo"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"70caacb091dcee3a5a207957798931db5b8ae35f","committime":"2021-04-03T15:50:37","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2\nSigned-off-by: Sam James ","commitid":"4e59a6dd8c7a5977f1e48ecab4bd00c0d9c96b38","committime":"2021-04-02T09:43:30","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: fix variable references"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"628a8c676041923df3a1aca442d36fa72cf11373","committime":"2021-02-15T00:52:38","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Double KEYWORDS lines break tools like ekeyword and Nattka.\nAs per PMS, blank\/empty KEYWORDS is implied by not defining\nthe variable.\n\nSee: https:\/\/projects.gentoo.org\/qa\/policy-guide\/ebuild-format.html#pg0105\nPackage-Manager: Portage-3.0.14, Repoman-3.0.2\nSigned-off-by: Sam James ","commitid":"33a73493118b599c140acff1b8e19ba261a0c007","committime":"2021-02-14T23:02:39","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: fix double KEYWORDS"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2c6c2efe4c1a02689bcd5e6e58a54035dec44025","committime":"2021-01-31T02:18:05","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"d8cbaa62dbf4abc31cc74d2cc12e3d0c7ac9b70a","committime":"2021-01-30T23:36:06","packageid":60581,"repoid":1,"summary":"*\/*: Remove obsolete values from PYTHON_COMPAT"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"eefac7f204b08cc886a19ee06b4e9019753e6230","committime":"2020-06-07T11:05:21","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Also run tests\n\nThanks-to: Tupone Alfredo\nCloses: https:\/\/bugs.gentoo.org\/701784\nPackage-Manager: Portage-2.3.100, Repoman-2.3.22\nSigned-off-by: Pacho Ramos ","commitid":"c0303b6f37b2ad50973f99b2d9d962d3cef4a1e6","committime":"2020-06-07T10:45:06","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Don't install tests package"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3de1592ab7701d0e90b6c93fee7aa277928b8210","committime":"2020-01-16T06:45:47","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"bebba32d00cd8635166a3b2856696000f20d4df9","committime":"2020-01-16T06:25:31","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Remove Python 2"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4747d40122d485033fe9f863f4b4330bf0651903","committime":"2020-01-05T11:14:55","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Closes: https:\/\/github.com\/gentoo\/gentoo\/pull\/14246\nSigned-off-by: Michał Górny ","commitid":"cd3f25deb13cf4d6c9d721d515dbf772a988426f","committime":"2020-01-05T09:36:11","packageid":60581,"repoid":1,"summary":"*\/*: Clean PYTHON_COMPAT of obsolete impls"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3a99cfd15a6c4825e51299117d8ccd5474a74f9f","committime":"2019-08-23T13:46:12","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Package-Manager: Portage-2.3.72, Repoman-2.3.17\nSigned-off-by: Alexey Shvetsov ","commitid":"a3906fed13894b43b206e5ee3875ee3ba668ae51","committime":"2019-08-23T13:17:41","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Version bump"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a7e74d110deb79589f0a7cf078c47b10d659fc35","committime":"2018-09-03T21:44:06","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Package-Manager: Portage-2.3.47, Repoman-2.3.10","commitid":"5bfc612fcf6f0fa77efd007f02ccbbcd5a199d63","committime":"2018-09-03T21:20:07","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"4e58a061195d348da47eb8cee0eb20297b79160f","committime":"2017-07-30T10:23:31","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"david@hicks.id.au","authorname":"David Hicks","body":"Package-Manager: Portage-2.3.6, Repoman-2.3.3","commitid":"8a2fe401e6313956e66c3ca40562a41764d65cd5","committime":"2017-07-29T18:47:50","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: use HTTPS for GitHub"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":60581,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"23d0756d534f49612217f9bd36e4947c65317804","committime":"2016-07-19T10:41:54","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Package-Manager: portage-2.3.0","commitid":"7d36362dfa4df704de5c7bbe00f4ba1718ac4bdc","committime":"2016-07-19T10:38:26","packageid":60581,"repoid":1,"summary":"sci-chemistry\/GromacsWrapper: Version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"b8cce015b8b1869513a3bbb621225f2b688c56c8","committime":"2015-08-24T11:46:39","packageid":60581,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Convert all URLs for sites supporting encrypted connections from http to https\n\nSigned-off-by: Justin Lecher ","commitid":"00846f5f7be003565185b4945997bd9c766ecd96","committime":"2015-08-24T11:26:27","packageid":60581,"repoid":1,"summary":"Use https by default"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":60581,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":60581,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":60581,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":859338,"firstseen":"2025-04-03T11:39:09.924259","license":"GPL-3 LGPL-3","moddate":"2026-03-30T13:49:45","packageid":60581,"repoid":1,"slot":"0","uses":["python_targets_python3_11","python_targets_python3_12","python_targets_python3_13","test"],"version":"0.9.1"}],"masks":[],"package":{"categoryid":416,"description":"Python framework for Gromacs","firstseen":"2013-03-23T14:36:09.782010","maintainer":"alexxy@gentoo.org","maintainername":"Alexey Shvetsov","name":"GromacsWrapper","packageid":60581},"rdependencies":[{"block":false,"categoryid":336,"description":"Pure python plotting library with matlab like syntax","ebuildids":[859338],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"matplotlib","packageid":41930,"summary":"matplotlib is an interactive library for plotting and doing basic data analysis in python with a syntax similar to matlab. It provides a variety of backends and hard copy formats for almost ready publication plots."},{"block":false,"categoryid":336,"description":"Fast array and numerical python library","ebuildids":[859338],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"numpy","packageid":42464,"summary":"NumPy is a general-purpose array-processing Python package designed to efficiently manipulate large multi-dimensional arrays of arbitrary records without sacrificing too much speed for small multi-dimensional arrays. There are also basic facilities for discrete fourier transform, basic linear algebra and random number generation. It is the successor of Numeric and numarray."},{"block":false,"categoryid":450,"description":"An interpreted, interactive, object-oriented programming language","ebuildids":[859338,859338,859338],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"python","packageid":43095},{"block":false,"categoryid":336,"description":"Python 2 and 3 compatibility library","ebuildids":[859338],"firstseen":"2012-04-01T14:38:06.779429","maintainer":"python@gentoo.org","maintainername":"Python","name":"six","packageid":59086},{"block":false,"categoryid":318,"description":"Numerical first aid kit (with numpy\/scipy)","ebuildids":[859338],"firstseen":"2019-08-23T13:52:51.790972","name":"numkit","packageid":70098}],"repos":[{"branch":"master","lastcommit":"43a4988e0fa15f038220ebd74aa888ace0c9b303","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/gromacswrapper.readthedocs.io"],"uses":[{"description":"Enable dependencies and\/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)","isdefault":false,"use":"test"},{"description":"Build with Python 3.11","group":"python_targets","isdefault":false,"use":"python3_11"},{"description":"Build with Python 3.12","group":"python_targets","isdefault":false,"use":"python3_12"},{"description":"Build with Python 3.13","group":"python_targets","isdefault":false,"use":"python3_13"}]}