{"bugs":[{"bugid":927894,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-chemistry\/autodock_vina-1.2.5 does not respect LDFLAGS"}],"categories":[{"categoryid":393,"name":"dev-libs","summary":"The dev-libs category contains various miscellaneous programming libraries."},{"categoryid":416,"name":"sci-chemistry","summary":"The sci-chemistry category contains software that can be used in chemistral scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"84f5cc8e0b01513227b6bdcdb7878f3c7ac61508","committime":"2026-01-28T18:46:11","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/969024\nSigned-off-by: Andreas Sturmlechner <asturm@gentoo.org>","commitid":"e3a216cae029458db710a559f17121f08e7db69f","committime":"2026-01-27T23:27:31","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: drop 1.2.5"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"9870c5ff61ab4ea5d0fd2c018d7966cce689bd55","committime":"2026-01-27T09:15:51","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"eschwartz@gentoo.org","authorname":"Eli Schwartz","body":"Signed-off-by: Eli Schwartz <eschwartz@gentoo.org>","commitid":"20c79bee941d9916a9a810ea6cce517c64a9d004","committime":"2026-01-27T01:02:26","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: Stabilize 1.2.7 amd64, #969024"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f4db1551d169363ce2a10a39be8423807dca6e58","committime":"2026-01-16T12:00:49","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>","commitid":"d9bb26b7ec22fed94308e440a16d54f4add8c956","committime":"2026-01-15T21:39:35","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: drop 1.1.2-r1"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/963490\nSigned-off-by: Andreas Sturmlechner <asturm@gentoo.org>","commitid":"8c4e3b7978e2438bf5c9ae92fcb8422e88bc4a54","committime":"2026-01-15T21:38:04","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: add 1.2.7, EAPI-8, fixes build w\/ boost-1.89"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"ee1ddf68a795d45151e613a2b67a3205a6044807","committime":"2024-07-13T05:34:05","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>","commitid":"f5b9787ed57d24652fe4a8dc8401d35bd78c7b99","committime":"2024-07-13T05:22:16","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: Stabilize 1.2.5 amd64, #935909"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"ef00d8f90b012afcbbb8db54a79ceb9fc2bda7bd","committime":"2024-07-12T20:33:49","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Closes: https:\/\/bugs.gentoo.org\/932237\nSigned-off-by: Sam James <sam@gentoo.org>","commitid":"e7ea26f08a0d2a9b4c4f4c385a8c2488c073387c","committime":"2024-07-12T20:17:28","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: fix build w\/ boost-1.85"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c712b4a4f5e2d22b9b99cd7be1333e5bf279ce88","committime":"2024-03-26T11:18:41","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>","commitid":"c2eae57dd0815a47e8c59e0c6dbcda1eea67f949","committime":"2024-03-05T10:56:54","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: add 1.2.5"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3a58a21a537ed5e39c35969e661c2175221a3df4","committime":"2024-03-02T21:33:57","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Closes: https:\/\/bugs.gentoo.org\/913037\nCloses: https:\/\/bugs.gentoo.org\/924622\nSigned-off-by: Alexey Shvetsov <alexxy@gentoo.org>","commitid":"8ff06565cfa9e2d6114008541f2fae2c23f9e12c","committime":"2024-03-02T21:14:38","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: Fix build with recent boost"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>","commitid":"cc4ec3eb701d43a4a1d6cb8d931a077ed5962b27","committime":"2023-06-03T14:47:11","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2c1c2130085ee3ca679a92cac4f12dec2aed4e91","committime":"2022-09-04T12:31:48","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"065341128da7f5a3d89dab94c1fc4c92ef7cb1ea","committime":"2022-09-04T12:22:28","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: remove boost[threads(+)] usedep"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1e8c5a1bdb8f17d0c751dae7750504d634346982","committime":"2021-06-18T19:35:05","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-3.0.20, Repoman-3.0.3\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"c3f45d09f47f9f2438f0ba723920b31927c35dae","committime":"2021-06-18T19:17:23","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: Depend on dev-libs\/boost:=[threads(+)]"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"262da93bb89a371af7fb02a95c2dad0a3d8a5d91","committime":"2021-05-16T17:50:03","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/789702\nPackage-Manager: Portage-3.0.18, Repoman-3.0.3\nSigned-off-by: Andreas Sturmlechner <asturm@gentoo.org>","commitid":"94ad7eb2a2a84490626fe423556e8c15bb93a8b6","committime":"2021-05-16T17:34:33","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: Fix build w\/ boost-1.69"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0ddc87e07b959a78264b88b2b256b974eb813537","committime":"2020-02-13T22:06:49","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.88, Repoman-2.3.20\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"1d369fd5c461f5a6a85731893b202174158eb781","committime":"2020-02-13T21:38:00","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: [QA] inherit toolchain-funcs.eclass directly"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1c55701a8e3148cb3dcdc7d20103799ab75c573d","committime":"2020-02-08T11:26:28","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.87, Repoman-2.3.20\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"bbc280302422f9a4e29bc5867894f415d8a3ec0d","committime":"2020-02-08T10:55:49","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: Port to EAPI 7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":55781,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"f882d2a6db52a6cd05471deef4e2ff706240ecde","committime":"2015-08-16T21:12:53","packageid":55781,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Package-Manager: portage-2.2.20.1\nSigned-off-by: Justin Lecher <jlec@gentoo.org>","commitid":"1736183b6d7f2f753c9b275bd1d7085e0549705f","committime":"2015-08-16T11:33:39","packageid":55781,"repoid":1,"summary":"sci-chemistry\/autodock_vina: Require thread support in boost, bug #557822"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":55781,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson <robbat2@gentoo.org>\nX-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts\nX-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":55781,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":55781,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":393,"description":"Boost Libraries for C++","ebuildids":[887420],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"cpp@gentoo.org","maintainername":"Gentoo C++ Project","name":"boost","packageid":45155}],"depending":[],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":887420,"firstseen":"2026-01-16T12:05:16.671298","license":"Apache-2.0","moddate":"2026-03-22T20:20:57","packageid":55781,"repoid":1,"slot":"0","uses":["debug"],"version":"1.2.7"}],"masks":[],"package":{"categoryid":416,"description":"Program for drug discovery, molecular docking and virtual screening","firstseen":"2010-05-19T00:31:14.093199","maintainer":"sci-chemistry@gentoo.org","maintainername":"Gentoo Chemistry Project","name":"autodock_vina","packageid":55781,"summary":"AutoDock Vina is a new open-source program for drug discovery, molecular docking and virtual screening, offering multi-core capability, high performance and enhanced accuracy and ease of use. [1] AutoDock Vina has been designed and implemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps Research Institute. If you used AutoDock Vina in your work, please cite: O. Trott, A. J. Olson, AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization and multithreading Journal of Computational Chemistry 31 (2010) 455-461"},"rdependencies":[{"block":false,"categoryid":393,"description":"Boost Libraries for C++","ebuildids":[887420],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"cpp@gentoo.org","maintainername":"Gentoo C++ Project","name":"boost","packageid":45155}],"repos":[{"branch":"master","lastcommit":"f87ce2b74421571078063820dc1065e7089c9fa7","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/vina.scripps.edu\/"],"uses":[{"description":"Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https:\/\/wiki.gentoo.org\/wiki\/Project:Quality_Assurance\/Backtraces","isdefault":false,"use":"debug"}]}