sci-chemistry / coot

Crystallographic Object-Oriented Toolkit

Official package sites : https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/ ·

v0.8.2-r1 :: 0 :: gentoo (Masked by set 3243)

Modified
License
GPL-3
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
openmp static-libs test

General

openmp
Build support for the OpenMP (support parallel computing), requires >=sys-devel/gcc-4.2 built with USE="openmp"
static-libs
Build static versions of dynamic libraries as well
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

python_targets

python2_7
Build with Python 2.7

app-portage / elt-patches : Collection of patches for libtool.eclass

dev-db / sqlite : SQL database engine

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-lang / swig : Simplified Wrapper and Interface Generator

dev-libs / boost : Boost Libraries for C++

dev-libs / glib : The GLib library of C routines

dev-libs / gmp : Library for arbitrary-precision arithmetic on different type of numbers

dev-python / pygobject : Python bindings for GObject Introspection

dev-python / pygtk : GTK+2 bindings for Python

dev-scheme / greg : Testing-Framework for guile

dev-scheme / guile : GNU Ubiquitous Intelligent Language for Extensions

dev-scheme / guile-gui : Guile Scheme code that aims to implement a graphical user interface

dev-scheme / guile-lib : An accumulation place for pure-scheme Guile modules

dev-scheme / guile-www : Guile Scheme modules to facilitate HTTP, URL and CGI programming

dev-scheme / net-http : Library for doing HTTP client-side programming in Guile

gnome-base / libgnomecanvas : The Gnome 2 Canvas library

gnome-base / librsvg : Scalable Vector Graphics (SVG) rendering library

media-libs / freeglut : Completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library

media-libs / libpng : Portable Network Graphics library

net-dns / libidn : Internationalized Domain Names (IDN) implementation

net-misc / curl : A Client that groks URLs

sci-chemistry / probe : Evaluates atomic packing within or between molecules

sci-chemistry / reduce : Adds hydrogens to a Protein Data Bank (PDB) molecule structure file

sci-libs / clipper : Object-oriented libraries for crystallographic data and computation

sci-libs / coot-data : Data for the Crystallographic Object-Oriented Toolkit

sci-libs / fftw : Fast C library for the Discrete Fourier Transform

sci-libs / gsl : The GNU Scientific Library

sci-libs / libccp4 : The CCP4 C and F77 subroutine library

sci-libs / mmdb : The Coordinate Library for working with CCP4 coordinate files

sci-libs / monomer-db : Monomer library used for macromolecular structure building and refinement

sci-libs / ssm : A macromolecular coordinate superposition library

sys-devel / autoconf : Used to create autoconfiguration files

sys-devel / automake : Used to generate Makefile.in from Makefile.am

sys-devel / bc : Handy console-based calculator utility

sys-devel / libtool : A shared library tool for developers

sys-libs / readline : Another cute console display library

virtual / opengl : Virtual for OpenGL implementation

virtual / pkgconfig : Virtual for the pkg-config implementation

x11-libs / goocanvas : Canvas widget for GTK+ using the cairo 2D library for drawing

x11-libs / gtk+ : Gimp ToolKit +

x11-libs / gtkglext : GL extensions for Gtk+ 2.0

x11-libs / guile-gtk : GTK+ bindings for guile

dev-db / sqlite : SQL database engine

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-libs / boost : Boost Libraries for C++

dev-libs / glib : The GLib library of C routines

dev-libs / gmp : Library for arbitrary-precision arithmetic on different type of numbers

dev-python / pygobject : Python bindings for GObject Introspection

dev-python / pygtk : GTK+2 bindings for Python

dev-scheme / guile : GNU Ubiquitous Intelligent Language for Extensions

dev-scheme / guile-gui : Guile Scheme code that aims to implement a graphical user interface

dev-scheme / guile-lib : An accumulation place for pure-scheme Guile modules

dev-scheme / guile-www : Guile Scheme modules to facilitate HTTP, URL and CGI programming

dev-scheme / net-http : Library for doing HTTP client-side programming in Guile

gnome-base / libgnomecanvas : The Gnome 2 Canvas library

gnome-base / librsvg : Scalable Vector Graphics (SVG) rendering library

media-libs / freeglut : Completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library

media-libs / libpng : Portable Network Graphics library

net-dns / libidn : Internationalized Domain Names (IDN) implementation

net-misc / curl : A Client that groks URLs

sci-chemistry / probe : Evaluates atomic packing within or between molecules

sci-chemistry / reduce : Adds hydrogens to a Protein Data Bank (PDB) molecule structure file

sci-libs / clipper : Object-oriented libraries for crystallographic data and computation

sci-libs / coot-data : Data for the Crystallographic Object-Oriented Toolkit

sci-libs / fftw : Fast C library for the Discrete Fourier Transform

sci-libs / gsl : The GNU Scientific Library

sci-libs / libccp4 : The CCP4 C and F77 subroutine library

sci-libs / mmdb : The Coordinate Library for working with CCP4 coordinate files

sci-libs / monomer-db : Monomer library used for macromolecular structure building and refinement

sci-libs / ssm : A macromolecular coordinate superposition library

sys-libs / readline : Another cute console display library

virtual / opengl : Virtual for OpenGL implementation

x11-libs / goocanvas : Canvas widget for GTK+ using the cairo 2D library for drawing

x11-libs / gtk+ : Gimp ToolKit +

x11-libs / gtkglext : GL extensions for Gtk+ 2.0

x11-libs / guile-gtk : GTK+ bindings for guile

591410
sci-chemistry/coot-0.8.2-r1: "not using Guile" -> coot-glue-gtk2.c:8:22: fatal error: libguile.h: No such file or directory
639760
sci-chemistry/coot: treeclean

3243
Matt Turner
sci-chemistry/coot and its dependencies. Unmaintained. Still depends on guile-1.8. Masked for removal in 30 days, bug #639760.
  • dev-scheme/guile-gui
  • dev-scheme/guile-www
  • dev-scheme/net-http
  • sci-chemistry/coot
  • sci-chemistry/reduce
  • sci-libs/cctbx
  • sci-libs/clipper
  • sci-libs/coot-data
  • sci-libs/gpp4
  • sci-libs/libccp4
  • sci-libs/mmdb
  • sci-libs/monomer-db
  • sci-libs/ssm
Justin Lecher · gentoo
sci-chemistry/coot: Host testcases on gentoo infra
Closes: https://bugs.gentoo.org/640606 Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.17, Repoman-2.3.6
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Justin Lecher · gentoo
sci-chemistry/coot: Depend on guile-1 as workaround
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=591410 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-chemistry/coot: Chop DESCRIPTION to 80 chars
Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
Cleanup unused Manifest entries
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
Drop "CCP4: Software for Macromolecular Crystallography"
obsoletes: Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=160190 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=324059 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=332485 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367771 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367773 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=383227 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=448756 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460502 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460504 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=466936 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467040 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467048 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=476580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478586 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478588 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478594 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478604 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521646 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=528512 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=530878 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=540760 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=555614 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556498 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=557038 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=561196 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=562780 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Mike Frysinger · gentoo
fix various encoding corruption
Justin Lecher · gentoo
sci-chemistry/coot: Don't set LD_LIBRARY_PATH
Package-Manager: portage-2.2.21 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-chemistry/coot: Add KEYWORDS back
Package-Manager: portage-2.2.21 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Agostino Sarubbo · gentoo
sci-chemistry/coot: x86 stable wrt bug #529518
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86"
Justin Lecher · gentoo
sci-chemistry/coot: Version Bump
Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed