Versions
v1.9.7 :: 0 :: gentoo
- Modified
- License
- LGPL-2.1+
- Keywords
- ~amd64 ~amd64-linux ~x86 ~x86-linux
- USE flags
- test
USE flags
General
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
python_targets
- python3_10
- Build with Python 3.10
- python3_11
- Build with Python 3.11
Dependencies
dev-python / astor : Read/rewrite/write Python ASTs
dev-python / astunparse : Astun parser for python
dev-python / ipykernel : IPython Kernel for Jupyter
dev-python / jupyter-client : Jupyter protocol implementation and client libraries
dev-python / nbformat : Reference implementation of the Jupyter Notebook format
dev-python / networkx : Python tools to manipulate graphs and complex networks
dev-python / numpy : Fast array and numerical python library
dev-python / pandas : Powerful data structures for data analysis and statistics
dev-python / pyparsing : Easy-to-use Python module for text parsing
dev-python / scipy : Scientific algorithms library for Python
dev-python / tables : Hierarchical datasets for Python
sci-libs / scikit-learn : Machine learning library for Python
Runtime Dependencies
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-python / astor : Read/rewrite/write Python ASTs
dev-python / astunparse : Astun parser for python
dev-python / networkx : Python tools to manipulate graphs and complex networks
dev-python / numpy : Fast array and numerical python library
dev-python / pandas : Powerful data structures for data analysis and statistics
dev-python / pyparsing : Easy-to-use Python module for text parsing
dev-python / scipy : Scientific algorithms library for Python
dev-python / tables : Hierarchical datasets for Python
Depending packages
Bugs
- 741320
- sci-chemistry/mdtraj-1.9.7 fails to link with LLD because of /usr/lib in the link command line
- 836859
- sci-chemistry/mdtraj-1.9.7 fails tests on MUSL
- 862387
- sci-chemistry/mdtraj-1.9.7 fails to compile (lto): trr_header.h:28:5: error: type of do_trnheader does not match original declaration [-Werror=lto-type-mismatch]
- 886105
- sci-chemistry/mdtraj-1.9.7 fails to compile (CLANG-STRICTER-SYSTEM): tng_io.c:1064:57: error: incompatible function pointer types assigning to tng_function_status ()(const tng_trajectory_t, int32_t ) (aka tng_function_status ()(struct tng_trajectory cons
- 910019
- sci-chemistry/mdtraj: needs to use PEP517 build (DistutilsNonPEP517Build)
- 911646
- sci-chemistry/mdtraj-1.9.7 - Error compiling Cython file:
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
Rename dev-python/{pytables → tables}
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-chemistry/mdtraj: depend on <cython-3
Bug: https://bugs.gentoo.org/911646 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/mdtraj: BDEPEND on cython
Closes: https://bugs.gentoo.org/905782 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/mdtraj: enable py3.11
Closes: https://bugs.gentoo.org/897198 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-chemistry/mdtraj: drop 1.9.4
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
Rename dev-python/{jupyter_client → jupyter-client}
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-chemistry/mdtraj: Use pypi.eclass
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: remove py3.8 from PYTHON_COMPAT
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Mair-Keimberger · gentoo
sci-chemistry/mdtraj: use HTTPS, fix LICENSE
Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andrew Ammerlaan · gentoo
sci-chemistry/mdtraj: add missing test dep
Closes: https://bugs.gentoo.org/830174 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andrew Ammerlaan · gentoo
sci-chemistry/mdtraj: add version 1.9.7, enable py3.10, fix tests
Bug: https://bugs.gentoo.org/809770 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
sci-chemistry/mdtraj: Fix DISTUTILS_USE_SETUPTOOLS
Closes: https://bugs.gentoo.org/809767 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Remove obsolete values from PYTHON_COMPAT
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-chemistry/mdtraj: Remove old (py3.6)
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alexey Shvetsov · gentoo
sci-chemistry/mdtraj: Works with py39
Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
Move {sci-libs → dev-python}/scipy
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/mdtraj: Bump to 1.9.4
Closes: https://bugs.gentoo.org/711696 Closes: https://bugs.gentoo.org/718478 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Clean PYTHON_COMPAT of obsolete impls
Closes: https://github.com/gentoo/gentoo/pull/14246 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas Sturmlechner · gentoo
sci-chemistry/mdtraj: Drop python2_7
Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alexey Shvetsov · gentoo
sci-chemistry/mdtraj: Fix newline
Package-Manager: Portage-2.3.40, Repoman-2.3.9 - Repository mirror & CI · gentoo
Merge updates from master - Alexey Shvetsov · gentoo
sci-chemistry/mdtraj: Initial import
Package-Manager: Portage-2.3.41, Repoman-2.3.9