{"bugs":[{"bugid":862387,"firstseen":"2025-08-12T06:05:00.645922","severity":"normal","status":"CONFIRMED","summary":"sci-chemistry\/mdtraj-1.9.7 fails to compile (lto): trr_header.h:28:5: error: type of do_trnheader does not match original declaration [-Werror=lto-type-mismatch]"},{"bugid":965274,"firstseen":"2025-10-28T22:51:30.986517","severity":"normal","status":"CONFIRMED","summary":"sci-chemistry\/mdtraj-1.10.3 - [gcc-16] [portage-9999] mdtraj\/...\/trr_header.h: error: type of do_trnheader does not match original declaration [-Werror=lto-type-mismatch]"}],"categories":[{"categoryid":450,"name":"dev-lang","summary":"The dev-lang category contains various programming language implementations and related tools."},{"categoryid":336,"name":"dev-python","summary":"The dev-python category contains packages whose primary purpose is to provide Python modules, extensions and bindings, as well as tools and utilities useful for development in the Python programming language."},{"categoryid":412,"name":"net-mail","summary":"The net-mail category contains various email-related utilities."},{"categoryid":416,"name":"sci-chemistry","summary":"The sci-chemistry category contains software that can be used in chemistral scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4fbd7a8f65ada046c2bbb359fc8bfd8417e7998a","committime":"2026-03-08T19:30:54","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"0e6996454884b5336ebe4db1628feef9a8640f86","committime":"2026-03-08T19:12:51","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Drop py3.11 (following IPython)"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen ","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":78258,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"518df8c6cc6c5bb333412f1b57a5ea45fe8ff322","committime":"2025-04-03T23:05:18","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Signed-off-by: Alexey Shvetsov ","commitid":"0b382f5a8f123df3ad02001fffd1bfece1a8b4cd","committime":"2025-04-03T22:49:17","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: new package, add 1.10.3"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8fe4da93c478a3c31999febbdb974b6cae4bffbf","committime":"2024-04-13T15:04:00","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Bug: https:\/\/bugs.gentoo.org\/911646\nSigned-off-by: Michał Górny ","commitid":"8e78e2bf9ed815575f8c00157166095423e14681","committime":"2024-04-13T14:32:16","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Remove last-rited pkg"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4146720a2aac65d58850cf72a9b76c385bf03e47","committime":"2024-03-10T19:18:49","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"7608be1fa4d2695e95b14341a3de6f346b87682f","committime":"2024-03-10T18:44:16","packageid":78258,"repoid":1,"summary":"Move {sci-libs → dev-python}\/scikit-learn"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"41949ce36dfe2acb6da1b01281722166d5962566","committime":"2023-10-05T14:16:48","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"40140c90b36e89419b7e2f4d85c17f267adf5fee","committime":"2023-10-05T14:04:48","packageid":78258,"repoid":1,"summary":"Rename dev-python\/{pytables → tables}"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f5778ae903693d4b72ae3acc42942cde44de90c1","committime":"2023-08-13T01:16:38","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Bug: https:\/\/bugs.gentoo.org\/911646\nSigned-off-by: Sam James ","commitid":"bd539f89b5aa658654fd717864e6210913d05942","committime":"2023-08-13T00:51:37","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: depend on ","commitid":"f0a4231911fe8556404dd8fc8d061c2dbba69a09","committime":"2023-05-06T14:34:12","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: BDEPEND on cython"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"9045d3bd4044e2e45f33c23eed518da798ac5c0f","committime":"2023-05-05T14:32:58","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Closes: https:\/\/bugs.gentoo.org\/897198\nSigned-off-by: Pacho Ramos ","commitid":"a51915fb410cf715cd1610b3539830321e6867d2","committime":"2023-05-05T14:25:18","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: enable py3.11"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"28373d3540d4e1832ae086838f5e39930cd1aca4","committime":"2023-05-01T13:03:50","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"6c8ded23facd1c4667e5684413de953b03c59684","committime":"2023-05-01T12:44:12","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: drop 1.9.4"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"886da96fb0b7af123e2d33e51b9e732938318b79","committime":"2023-04-14T13:31:52","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"9492595553aa0ab558c84c8aa4f002e931274e38","committime":"2023-04-14T13:19:22","packageid":78258,"repoid":1,"summary":"Rename dev-python\/{jupyter_client → jupyter-client}"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fe825c6cab23245222aec000fcf84d337f2935f3","committime":"2023-03-16T19:02:05","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"3be144a49f3324a6c2bf2ba744e7544a45c75679","committime":"2023-03-16T16:04:07","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Use pypi.eclass"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8d0ebee607de5c63d747980fbeb0806c193a29c9","committime":"2023-01-14T13:02:17","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"ed468028e725c9580a7b2ee02d6b7b9375f7a0b2","committime":"2023-01-14T12:51:19","packageid":78258,"repoid":1,"summary":"*\/*: remove py3.8 from PYTHON_COMPAT"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c844f80c426df4a64ef7f934dea6226ef4d57cf6","committime":"2022-11-19T11:46:45","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mmk@levelnine.at","authorname":"Michael Mair-Keimberger","body":"Signed-off-by: Michael Mair-Keimberger \nSigned-off-by: Andrew Ammerlaan ","commitid":"1e684c51a65cd1739398c8d4fc8d343dd2dc176b","committime":"2022-11-19T08:54:49","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: use HTTPS, fix LICENSE"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6f33551496fda05e70ba4bbb0c41493a14547fff","committime":"2021-12-29T12:21:53","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"andrewammerlaan@gentoo.org","authorname":"Andrew Ammerlaan","body":"Closes: https:\/\/bugs.gentoo.org\/830174\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Andrew Ammerlaan ","commitid":"44c139783e28d1fa9180e10dae9a1ceff073f9f0","committime":"2021-12-29T12:01:40","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: add missing test dep"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"9d25563f7e3c2ea78731cda918c9dede10407bfe","committime":"2021-12-28T14:21:39","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"andrewammerlaan@gentoo.org","authorname":"Andrew Ammerlaan","body":"Bug: https:\/\/bugs.gentoo.org\/809770\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Andrew Ammerlaan ","commitid":"42c276a1602f6ddf7f1725e7b81115a1aa4ecc0e","committime":"2021-12-28T14:14:48","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: add version 1.9.7, enable py3.10, fix tests"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"279daef1e49f55e208b00d13284bb3f151e5e4dd","committime":"2021-09-13T18:21:17","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jsmolic@gentoo.org","authorname":"Jakov Smolić","body":"Closes: https:\/\/bugs.gentoo.org\/809767\nSigned-off-by: Jakov Smolić ","commitid":"03f5761951b58157b161cd65fb35b7cd6bd4be92","committime":"2021-09-13T18:03:39","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Fix DISTUTILS_USE_SETUPTOOLS"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2c6c2efe4c1a02689bcd5e6e58a54035dec44025","committime":"2021-01-31T02:18:05","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"d8cbaa62dbf4abc31cc74d2cc12e3d0c7ac9b70a","committime":"2021-01-30T23:36:06","packageid":78258,"repoid":1,"summary":"*\/*: Remove obsolete values from PYTHON_COMPAT"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"17d73ebcd13a3fcde14166181e1d4fb48efd02cd","committime":"2021-01-01T02:05:08","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"f2aba2b456b54511128bb4427fdd492500ca360b","committime":"2021-01-01T01:47:57","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Remove old (py3.6)"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"b679bc31e999cb644589da6d39db762a6e636544","committime":"2020-10-13T20:35:01","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Package-Manager: Portage-3.0.8, Repoman-3.0.1\nSigned-off-by: Alexey Shvetsov ","commitid":"c958bb24e3101d9a6286259d248a926d2f757dea","committime":"2020-10-13T20:08:04","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Works with py39"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a8650f2b6e54b0e9a1ea3f129d314fdfd8ce6f3f","committime":"2020-09-18T10:40:41","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"51a7be728639841f69b134f8acebeaa0fd3e4fe9","committime":"2020-09-18T10:07:08","packageid":78258,"repoid":1,"summary":"Move {sci-libs → dev-python}\/scipy"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5fabd6268fb09356333581a79aae441ffaaae82d","committime":"2020-06-13T19:05:06","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Closes: https:\/\/bugs.gentoo.org\/711696\nCloses: https:\/\/bugs.gentoo.org\/718478\nPackage-Manager: Portage-2.3.100, Repoman-2.3.22\nSigned-off-by: Pacho Ramos ","commitid":"4b72e59ed9b1fcdb1ab88ede59c9a863549c5295","committime":"2020-06-13T17:41:10","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Bump to 1.9.4"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4747d40122d485033fe9f863f4b4330bf0651903","committime":"2020-01-05T11:14:55","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Closes: https:\/\/github.com\/gentoo\/gentoo\/pull\/14246\nSigned-off-by: Michał Górny ","commitid":"cd3f25deb13cf4d6c9d721d515dbf772a988426f","committime":"2020-01-05T09:36:11","packageid":78258,"repoid":1,"summary":"*\/*: Clean PYTHON_COMPAT of obsolete impls"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fcbb08177b0ad2b9ec21a21325b79c24ae4ff81b","committime":"2019-12-29T13:45:31","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-2.3.84, Repoman-2.3.20\nSigned-off-by: Andreas Sturmlechner ","commitid":"9e4de76951dc4716b59a653647271cb430e9aded","committime":"2019-12-28T16:45:30","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Drop python2_7"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fef742528aacdd4ffa4e59ea0354106ca161650e","committime":"2019-12-10T23:48:11","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"The result was achieved via the following pipeline:\n\n pkgcheck scan -c RestrictTestCheck -R FormatReporter \\\n --format '{category}\/{package}\/{package}-{version}.ebuild' |\n xargs -n32 grep -L RESTRICT |\n xargs -n32 sed -i -e '\/^IUSE=.*test\/aRESTRICT=\"!test? ( test )\"'\n\nThe resulting metadata was compared before and after the change.\nFew Go ebuilds had to be fixed manually due to implicit RESTRICT=strip\nadded by the eclass. Two ebuilds have to be fixed because of multiline\nIUSE.\n\nSuggested-by: Robin H. Johnson \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/13942\nSigned-off-by: Michał Górny ","commitid":"064af661d0c9a31cecdf348632bc5603333a9149","committime":"2019-12-10T22:02:54","packageid":78258,"repoid":1,"summary":"*\/*: [QA] Fix trivial cases of MissingTestRestrict"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"23e869c7bf082c6e3582d0ddde70731e1c49beab","committime":"2018-06-29T12:46:00","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@omrb.pnpi.spb.ru","authorname":"Alexey Shvetsov","body":"Package-Manager: Portage-2.3.40, Repoman-2.3.9","commitid":"70a94bd23269b813b22981b69c4b5a23718d73d8","committime":"2018-06-29T12:36:01","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Fix newline"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8def387217fa31a8ba853b4d05f9689e1ded2ace","committime":"2018-06-28T21:45:56","packageid":78258,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"alexxy@gentoo.org","authorname":"Alexey Shvetsov","body":"Package-Manager: Portage-2.3.41, Repoman-2.3.9","commitid":"37d77f4d6250277c494aa6353f3cebe49db2e900","committime":"2018-06-28T21:28:09","packageid":78258,"repoid":1,"summary":"sci-chemistry\/mdtraj: Initial import"}],"dependencies":[{"block":false,"categoryid":336,"description":"Fast array and numerical python library","ebuildids":[859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"numpy","packageid":42464,"summary":"NumPy is a general-purpose array-processing Python package designed to efficiently manipulate large multi-dimensional arrays of arbitrary records without sacrificing too much speed for small multi-dimensional arrays. There are also basic facilities for discrete fourier transform, basic linear algebra and random number generation. It is the successor of Numeric and numarray."},{"block":false,"categoryid":336,"description":"Python tools to manipulate graphs and complex networks","ebuildids":[859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"networkx","packageid":42524,"summary":"NetworkX is a Python-based package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. The structure of a graph or network is encoded in the edges (connections, links, ties, arcs, bonds) between nodes (vertices, sites, actors). If unqualified, by graph we mean a simple undirected graph, i.e. no self-loops and no multiple edges are allowed. By a network we usually mean a graph with weights (fields, properties) on nodes and\/or edges. The potential audience for NetworkX includes: mathematicians, physicists, biologists, computer scientists, social scientists."},{"block":false,"categoryid":450,"description":"An interpreted, interactive, object-oriented programming language","ebuildids":[859388,859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"python","packageid":43095},{"block":false,"categoryid":336,"description":"Easy-to-use Python module for text parsing","ebuildids":[859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"pyparsing","packageid":45850,"summary":"The pyparsing module is an alternative approach to creating and executing simple grammars, vs. the traditional lex\/yacc approach, or the use of regular expressions. The pyparsing module provides a library of classes that client code uses to construct the grammar directly in Python code."},{"block":false,"categoryid":336,"description":"Powerful data structures for data analysis and statistics","ebuildids":[859388],"firstseen":"2012-04-21T14:36:55.954689","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"pandas","packageid":59171,"summary":"Pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with \"relational\" or \"labeled\" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python."},{"block":false,"categoryid":336,"description":"IPython Kernel for Jupyter","ebuildids":[859388],"firstseen":"2015-11-29T14:39:57.465400","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"ipykernel","packageid":64731},{"block":false,"categoryid":336,"description":"Reference implementation of the Jupyter Notebook format","ebuildids":[859388],"firstseen":"2015-11-29T14:39:57.465400","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"nbformat","packageid":64740,"summary":"Jupyther nbformat contains the reference implementation of the Jupyter Notebook format, and Python APIs for working with notebooks. There is also a JSON schema for notebook format versions >= 3."},{"block":false,"categoryid":336,"description":"pytest plugin to re-run tests to eliminate flaky failures","ebuildids":[859388],"firstseen":"2017-01-31T14:36:41.529583","name":"pytest-rerunfailures","packageid":66472},{"block":false,"categoryid":336,"description":"Pytest plugin for manipulating test data directories and files","ebuildids":[859388],"firstseen":"2020-09-15T09:39:46.380783","name":"pytest-datadir","packageid":71992},{"block":false,"categoryid":336,"description":"Scientific algorithms library for Python","ebuildids":[859388],"firstseen":"2020-09-18T11:46:09.155872","name":"scipy","packageid":72020,"summary":"SciPy is an open source library of scientific tools for Python. SciPy supplements the popular numpy module, gathering a variety of high level science and engineering modules together as a single package. SciPy includes modules for graphics and plotting, optimization, integration, special functions, signal and image processing, genetic algorithms, ODE solvers, and others."},{"block":false,"categoryid":336,"description":"Jupyter protocol implementation and client libraries","ebuildids":[859388],"firstseen":"2023-04-14T14:42:09.486751","name":"jupyter-client","packageid":76029,"summary":"Contains the reference implementation of the Jupyter protocol. It also provides client and kernel management APIs for working with kernels. It also provides the jupyter kernelspec entrypoint for installing kernelspecs for use with Jupyter frontends."},{"block":false,"categoryid":336,"description":"Hierarchical datasets for Python","ebuildids":[859388],"firstseen":"2023-10-05T15:29:55.642341","name":"tables","packageid":76553,"summary":"PyTables is a hierarchical database package designed to efficently manage very large amounts of data. PyTables is built on top of the HDF5 library and the NumPy package. It features an object-oriented interface that, combined with natural naming and C-code generated from Pyrex sources, makes it a fast, yet extremely easy to use tool for interactively save and retrieve large amounts of data."},{"block":false,"categoryid":336,"description":"Machine learning library for Python","ebuildids":[859388],"firstseen":"2024-03-10T19:35:36.745735","name":"scikit-learn","packageid":77162,"summary":"sklearn is a python library for machine learning. It aims to implement classic machine learning algorithms while remaining simple and efficient."}],"depending":[{"block":true,"categoryid":412,"description":"MailDir mailbox synchronizer","ebuildids":[35171,35171,841636,841636,867380,867380],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"net-mail@gentoo.org","maintainername":"Net-Mail","name":"isync","packageid":42762}],"ebuilds":[{"archs":["~amd64"],"ebuildid":859388,"firstseen":"2025-04-04T00:24:46.606947","license":"LGPL-2.1+","moddate":"2026-03-30T13:49:45","packageid":78258,"repoid":1,"slot":"0","uses":["debug","python_targets_python3_12","python_targets_python3_13","test"],"version":"1.10.3"}],"masks":[],"package":{"categoryid":416,"description":"Read, write and analyze MD trajectories with only a few lines of Python code","firstseen":"2025-04-04T00:24:46.606947","name":"mdtraj","packageid":78258},"rdependencies":[{"block":false,"categoryid":336,"description":"Fast array and numerical python library","ebuildids":[859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"numpy","packageid":42464,"summary":"NumPy is a general-purpose array-processing Python package designed to efficiently manipulate large multi-dimensional arrays of arbitrary records without sacrificing too much speed for small multi-dimensional arrays. There are also basic facilities for discrete fourier transform, basic linear algebra and random number generation. It is the successor of Numeric and numarray."},{"block":false,"categoryid":336,"description":"Python tools to manipulate graphs and complex networks","ebuildids":[859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"networkx","packageid":42524,"summary":"NetworkX is a Python-based package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks. The structure of a graph or network is encoded in the edges (connections, links, ties, arcs, bonds) between nodes (vertices, sites, actors). If unqualified, by graph we mean a simple undirected graph, i.e. no self-loops and no multiple edges are allowed. By a network we usually mean a graph with weights (fields, properties) on nodes and\/or edges. The potential audience for NetworkX includes: mathematicians, physicists, biologists, computer scientists, social scientists."},{"block":false,"categoryid":450,"description":"An interpreted, interactive, object-oriented programming language","ebuildids":[859388,859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"python","packageid":43095},{"block":false,"categoryid":336,"description":"Easy-to-use Python module for text parsing","ebuildids":[859388],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"python@gentoo.org","maintainername":"Python","name":"pyparsing","packageid":45850,"summary":"The pyparsing module is an alternative approach to creating and executing simple grammars, vs. the traditional lex\/yacc approach, or the use of regular expressions. The pyparsing module provides a library of classes that client code uses to construct the grammar directly in Python code."},{"block":false,"categoryid":336,"description":"Powerful data structures for data analysis and statistics","ebuildids":[859388],"firstseen":"2012-04-21T14:36:55.954689","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"pandas","packageid":59171,"summary":"Pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with \"relational\" or \"labeled\" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python."},{"block":false,"categoryid":336,"description":"Scientific algorithms library for Python","ebuildids":[859388],"firstseen":"2020-09-18T11:46:09.155872","name":"scipy","packageid":72020,"summary":"SciPy is an open source library of scientific tools for Python. SciPy supplements the popular numpy module, gathering a variety of high level science and engineering modules together as a single package. SciPy includes modules for graphics and plotting, optimization, integration, special functions, signal and image processing, genetic algorithms, ODE solvers, and others."},{"block":false,"categoryid":336,"description":"Hierarchical datasets for Python","ebuildids":[859388],"firstseen":"2023-10-05T15:29:55.642341","name":"tables","packageid":76553,"summary":"PyTables is a hierarchical database package designed to efficently manage very large amounts of data. PyTables is built on top of the HDF5 library and the NumPy package. It features an object-oriented interface that, combined with natural naming and C-code generated from Pyrex sources, makes it a fast, yet extremely easy to use tool for interactively save and retrieve large amounts of data."}],"repos":[{"branch":"master","lastcommit":"1f58741385367db432e79500a838ced67b2a773d","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/mdtraj.org"],"uses":[{"description":"Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https:\/\/wiki.gentoo.org\/wiki\/Project:Quality_Assurance\/Backtraces","isdefault":false,"use":"debug"},{"description":"Enable dependencies and\/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)","isdefault":false,"use":"test"},{"description":"Build with Python 3.12","group":"python_targets","isdefault":false,"use":"python3_12"},{"description":"Build with Python 3.13","group":"python_targets","isdefault":false,"use":"python3_13"}]}