sci-chemistry / pymol-plugins-psico

Pymol ScrIpt COllection

Official package sites : ·

v3.1-r1 :: 0 :: gentoo (Masked by set 3553)

~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags


Install a very minimal build (disables, for example, plugins, fonts, most drivers, non-critical features)


Build with Python 2.7

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-python / numpy : Fast array and numerical python library

media-libs / qhull : Geometry library

media-video / mplayer : Media Player for Linux

sci-biology / biopython : Python modules for computational molecular biology

sci-biology / stride : Protein secondary structure assignment from atomic coordinates

sci-chemistry / dssp : The protein secondary structure standard

sci-chemistry / mm-align : Protein Complex Structural Alignment

sci-chemistry / pdbmat : Calculate Tirion's model from pdb structures

sci-chemistry / pymol : A Python-extensible molecular graphics system

sci-chemistry / theseus : Maximum likelihood superpositioning and analysis of macromolecular structures

sci-chemistry / tm-align : Quick & Accurate Structural Alignment

sci-libs / mmtk : Molecular Modeling ToolKit for Python

sci-mathematics / diagrtb : Calculation of some eigenvectors of a large real, symmetrical, matrix

Michał Górny
Ancient vulnerable version of NumPy, plus all its revdeps. Removal in 30 days. Bug #627962.
  • <dev-python/numpy-1.14.5
  • dev-python/pyclimate
  • dev-python/scientificpython
  • sci-chemistry/parassign
  • sci-chemistry/pymol-plugins-psico
  • sci-libs/mmtk
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <>
Justin Lecher · gentoo
sci-chemistry/pymol-plugins-psico: Drop optional dep
Package-Manager: portage- Signed-off-by: Justin Lecher <>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <> X-Thanks: Alec Warner <> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <> - validation scripts X-Thanks: Patrick Lauer <> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed