{"bugs":[{"bugid":575908,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-chemistry\/tinker-7.1.2 : file collision with sci-libs\/ssm-1.4:0::gentoo"},{"bugid":770496,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-chemistry\/tinker-8.2.1 fails to compile"},{"bugid":782619,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-chemistry\/tinker-8.2.1-r1 calls ar directly"}],"categories":[{"categoryid":406,"name":"dev-java","summary":"The dev-java category contains libraries and utilities relevant to the Java programming language."},{"categoryid":393,"name":"dev-libs","summary":"The dev-libs category contains various miscellaneous programming libraries."},{"categoryid":428,"name":"dev-util","summary":"The dev-util category contains various miscellaneous development utilities."},{"categoryid":416,"name":"sci-chemistry","summary":"The sci-chemistry category contains software that can be used in chemistral scientific environments."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."},{"categoryid":343,"name":"sys-apps","summary":"The sys-apps category contains various core system applications, and some non-core system applications which have not yet been moved out into other sys- categories."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen <grobian@gentoo.org>","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":44363,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6aabcd1d616ab5e53bddd7bc756bb51ca734531e","committime":"2024-08-06T00:33:53","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"eschwartz@gentoo.org","authorname":"Eli Schwartz","body":"At least, the tests fail if you use LTO. So it is apparently unsafe,\nthough unsafe here means the results you get are wrong!\n\nCloses: https:\/\/bugs.gentoo.org\/878059\nSigned-off-by: Eli Schwartz <eschwartz@gentoo.org>","commitid":"08a8d3cde15e8323329cd3394572322f95c25653","committime":"2024-08-05T22:04:37","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: mark as LTO-unsafe"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1ea5b0ceb56baff4bf83d2b68fd3e659b83f51c2","committime":"2023-09-17T19:01:35","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"gentoo@pogatzki.net","authorname":"Volkmar W. Pogatzki","body":"Inherits java-pkg-2 instead of java-pkg-opt-2\n\nCloses: https:\/\/bugs.gentoo.org\/905682\nSigned-off-by: Volkmar W. Pogatzki <gentoo@pogatzki.net>\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/32797\nSigned-off-by: Arthur Zamarin <arthurzam@gentoo.org>","commitid":"815b1faa1e6eba300474853910295adbd39922a8","committime":"2023-09-15T08:26:56","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: update EAPI 6 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f5411e5e7897201c2cff9fa339c510e17c84815e","committime":"2022-05-14T21:47:53","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"d9cf87e1b4adc489c3ff548787979fa8abbcf87a","committime":"2022-05-14T21:30:20","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: [QA] tc-has-openmp → tc-check-openmp"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5938f2c30abac366b7520b6ea0ca9be7375cdaba","committime":"2021-06-18T21:20:03","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Add dependencies for either virtual\/pkgconfig, move it into BDEPEND\nwhere applicable, or add dependencies for libraries we're trying to find\nwith pkgconfig.\n\nPackage-Manager: Portage-3.0.18-prefix, Repoman-3.0.3\nSigned-off-by: Sam James <sam@gentoo.org>\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"c0b9792f76e1004dde888c1ce21e7d0cbd8c0dc2","committime":"2021-06-18T21:05:03","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: add pkgconfig or pkgconfig-referenced libs deps"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"824405877a9f8947595238a7dfec9a60b7e7c5e5","committime":"2021-04-16T11:35:32","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James <sam@gentoo.org>","commitid":"53b56bedd269dc0fcb998535120e362f46b59ad5","committime":"2021-04-16T08:14:17","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: eutils--"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"ed0e05e34ffdf9a906463702130abcb3e057cb18","committime":"2021-04-12T23:20:13","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-3.0.18, Repoman-3.0.3\nSigned-off-by: Sam James <sam@gentoo.org>","commitid":"3499c2577c5ac2cdceb3887198fa959edbab213a","committime":"2021-04-12T22:36:24","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: add missing pkgconfig (B)DEPEND"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"400d7e4af8167732ffa2bb7ec44518831232ac4f","committime":"2017-12-18T14:30:56","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Closes: https:\/\/bugs.gentoo.org\/640608\nSigned-off-by: Justin Lecher <jlec@gentoo.org>\nPackage-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"684103b35a168b0c28229780d651f10aed1652da","committime":"2017-12-18T13:54:36","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: Version Bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"ed039619916cb768ad91ac3a233d8084f8e5acbd","committime":"2017-08-19T14:30:05","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"monsieurp@gentoo.org","authorname":"Patrice Clement","body":"Gentoo-Bug: https:\/\/bugs.gentoo.org\/593712\n\nPackage-Manager: Portage-2.3.6, Repoman-2.3.1","commitid":"9f67f31cba28b4f6087dce1f43ef71fbc7b94abc","committime":"2017-08-19T14:26:49","packageid":44363,"repoid":1,"summary":"sci-chemistry\/tinker: add a blocker on sys-apps\/bar."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":44363,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":44363,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":44363,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson <robbat2@gentoo.org>\nX-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts\nX-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":44363,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"fca6415e02dea40ba185080ce553f86c7bf3b666","committime":"2015-06-21T12:20:50","packageid":44363,"repoid":1,"summary":"2015-06-21 12:20:49 UTC"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":44363,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":396,"description":"Virtual for Java Development Kit (JDK)","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"jdk","packageid":42905},{"block":true,"categoryid":343,"description":"Console Progress Bar","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"shell-tools@gentoo.org","maintainername":"Gentoo Shell Tools Project","name":"bar","packageid":43886},{"block":true,"categoryid":428,"description":"A graphical tool to compare and merge text files","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"grozin@gentoo.org","maintainername":"Andrey Grozin","name":"diffuse","packageid":45189},{"block":false,"categoryid":318,"description":"Fast C library for the Discrete Fourier Transform","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fftw","packageid":46108,"summary":"The Fastest Fourier Transform in the West is a C subroutine library for computing the Discrete Fourier Transform (DFT) in one or more dimensions, of both real and complex data, and of arbitrary input size. It is becoming the FFT library of choice for most applications. Benchmarks, performed on a variety of platforms, show that FFTW's performance is typically superior to that of other publicly available FFT software."},{"block":false,"categoryid":393,"description":"Minimal Abstraction Layer for Object-oriented C\/C++ programs","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"maloc","packageid":51429},{"block":false,"categoryid":406,"description":"Java environment configuration query tool","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"java-config","packageid":51445,"summary":"java-config is used to configure the Java subsystem on your Gentoo installation. In particular, it can be used to configure system-wide and per-user default JVMs, construct classpath env vars from installed java packages and be used to query for the path to various JDK tools."},{"block":false,"categoryid":396,"description":"Virtual for Fortran Compiler","ebuildids":[800091],"firstseen":"2011-04-15T18:23:49.887464","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fortran","packageid":57236}],"depending":[{"block":true,"categoryid":428,"description":"A graphical tool to compare and merge text files","ebuildids":[859543,868536],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"grozin@gentoo.org","maintainername":"Andrey Grozin","name":"diffuse","packageid":45189}],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":800091,"firstseen":"2023-09-17T20:07:37.621814","license":"Tinker","moddate":"2026-03-22T20:20:57","packageid":44363,"repoid":1,"slot":"0","uses":["examples"],"version":"8.2.1-r1"}],"masks":[],"package":{"categoryid":416,"description":"Molecular modeling package that includes force fields, such as AMBER and CHARMM","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-chemistry@gentoo.org","maintainername":"Gentoo Chemistry Project","name":"tinker","packageid":44363},"rdependencies":[{"block":true,"categoryid":343,"description":"Console Progress Bar","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"shell-tools@gentoo.org","maintainername":"Gentoo Shell Tools Project","name":"bar","packageid":43886},{"block":true,"categoryid":428,"description":"A graphical tool to compare and merge text files","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"grozin@gentoo.org","maintainername":"Andrey Grozin","name":"diffuse","packageid":45189},{"block":false,"categoryid":318,"description":"Fast C library for the Discrete Fourier Transform","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fftw","packageid":46108,"summary":"The Fastest Fourier Transform in the West is a C subroutine library for computing the Discrete Fourier Transform (DFT) in one or more dimensions, of both real and complex data, and of arbitrary input size. It is becoming the FFT library of choice for most applications. Benchmarks, performed on a variety of platforms, show that FFTW's performance is typically superior to that of other publicly available FFT software."},{"block":false,"categoryid":393,"description":"Minimal Abstraction Layer for Object-oriented C\/C++ programs","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"maloc","packageid":51429},{"block":false,"categoryid":406,"description":"Java environment configuration query tool","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"java-config","packageid":51445,"summary":"java-config is used to configure the Java subsystem on your Gentoo installation. In particular, it can be used to configure system-wide and per-user default JVMs, construct classpath env vars from installed java packages and be used to query for the path to various JDK tools."},{"block":false,"categoryid":396,"description":"Virtual for Java Runtime Environment (JRE)","ebuildids":[800091],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"jre","packageid":54546},{"block":false,"categoryid":396,"description":"Virtual for Fortran Compiler","ebuildids":[800091],"firstseen":"2011-04-15T18:23:49.887464","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fortran","packageid":57236}],"repos":[{"branch":"master","lastcommit":"09daf722ab2fdfcd52776c73efabc1635c80eaa1","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/dasher.wustl.edu\/tinker\/"],"uses":[{"description":"Install examples, usually source code","isdefault":false,"use":"examples"}]}