sci-chemistry / vmd

Visual Molecular Dynamics

Official package sites : http://www.ks.uiuc.edu/Research/vmd/ ·

v1.9.4_alpha43 :: 0 :: gentoo

Modified
License
vmd
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
cuda gromacs msms povray sqlite tachyon xinerama

General

cuda
Use nvidia cuda toolkit for speeding up computations
gromacs
Add support for TNG file format
msms
Add support for MSMS SES calcualtion tool
povray
Add support for povray raytracer for HQ images
sqlite
Add support for sqlite - embedded sql database
tachyon
Add support for tachyon raytracer for HQ images
xinerama
Add support for querying multi-monitor screen geometry through the Xinerama API

python_single_target

python3_6
Build for Python 3.6 only
python3_7
Build for Python 3.7 only
python3_8
Build for Python 3.8 only
python3_9
Build for Python 3.9 only

dev-db / sqlite : SQL database engine

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-lang / tk : Tk Widget Set

dev-libs / expat : Stream-oriented XML parser library

dev-python / numpy : Fast array and numerical python library

dev-util / desktop-file-utils : Command line utilities to work with desktop menu entries

dev-util / nvidia-cuda-toolkit : NVIDIA CUDA Toolkit (compiler and friends)

media-gfx / tachyon : A portable, high performance parallel ray tracing system

sci-chemistry / gromacs : The ultimate molecular dynamics simulation package

sci-libs / netcdf : Scientific library and interface for array oriented data access

virtual / opengl : Virtual for OpenGL implementation

x11-libs / fltk : C++ user interface toolkit for X and OpenGL

x11-libs / libXft : X.Org Xft library

x11-libs / libXi : X.Org Xi library

x11-libs / libXinerama : X.Org Xinerama library

x11-misc / shared-mime-info : The Shared MIME-info Database specification

dev-db / sqlite : SQL database engine

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-lang / tk : Tk Widget Set

dev-libs / expat : Stream-oriented XML parser library

dev-python / numpy : Fast array and numerical python library

dev-util / nvidia-cuda-toolkit : NVIDIA CUDA Toolkit (compiler and friends)

media-gfx / povray : The Persistence of Vision Raytracer

media-gfx / tachyon : A portable, high performance parallel ray tracing system

sci-biology / stride : Protein secondary structure assignment from atomic coordinates

sci-chemistry / chemical-mime-data : A collection of data files to add support for chemical MIME types

sci-chemistry / gromacs : The ultimate molecular dynamics simulation package

sci-chemistry / msms-bin : MSMS very efficiently computes triangulations of Solvent Excluded Surfaces

sci-chemistry / surf : Solvent accesible Surface calculator

sci-libs / netcdf : Scientific library and interface for array oriented data access

virtual / opengl : Virtual for OpenGL implementation

x11-libs / fltk : C++ user interface toolkit for X and OpenGL

x11-libs / libXft : X.Org Xft library

x11-libs / libXi : X.Org Xi library

x11-libs / libXinerama : X.Org Xinerama library

x11-terms / xterm : Terminal Emulator for X Windows

640440
sci-chemistry/vmd-1.9.3: fetch issue expecting .tar vs .tar.gz file
748210
sci-chemistry/vmd: SizeViolation issue
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Apply fixes to plugins
Adapt patch to 1.9.4 Closes: https://bugs.gentoo.org/741978 Thanks-to: Hypoon Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-chemistry/vmd: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Allow to apply user patches in plugins
Bug: https://bugs.gentoo.org/show_bug.cgi?id=741978 Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Fix pkg_nofetch message
Bug: https://bugs.gentoo.org/735462 Package-Manager: Portage-3.0.6, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Bump to 1.9.4_alpha43
Bug: https://bugs.gentoo.org/735462 Package-Manager: Portage-3.0.4, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Drop old
Package-Manager: Portage-3.0.0, Repoman-2.3.23 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Fix support for current CUDA versions
Package-Manager: Portage-2.3.93, Repoman-2.3.20 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-chemistry/vmd: Switch to PYTHON_MULTI_USEDEP API
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-chemistry/vmd: Revbump post dep change
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-chemistry/vmd: Permit numpy-python2
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Fix /tmp PATH, open .pdb files as pymol does
Package-Manager: Portage-2.3.81, Repoman-2.3.19 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Make repoman more happy
Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Pacho Ramos · gentoo
sci-chemistry/vmd: Multiple fixes and update ebuild
- Longer explanation to download sources files (#640440) - Fix tachyon support (#644122) - Install netcdf plugin (#661636) Bug: https://bugs.gentoo.org/640440 Closes: https://bugs.gentoo.org/644122 Closes: https://bugs.gentoo.org/661636 Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Ben Kohler · gentoo
sci-chemistry/vmd: don't reference ${DISTDIR} in pkg_nofetch
Closes: https://bugs.gentoo.org/663224 Package-Manager: Portage-2.3.59, Repoman-2.3.12 Signed-off-by: Ben Kohler <bkohler@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-chemistry/vmd: Needs to be rebuilt with gromacs updates
Signed-off-by: Pacho Ramos <pacho@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11
Alexey Shvetsov · gentoo
sci-chemistry/vmd: Version bump
Package-Manager: Portage-2.3.16, Repoman-2.3.6
David Seifert · gentoo
sci-chemistry/vmd: [QA] Add missing python metadata variables
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Pacho Ramos · gentoo
sci-chemistry/vmd: Needs to be rebuilt with netcdf subslot bumps
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Justin Lecher · gentoo
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed