Versions
v1.9.4_alpha57-r1 :: 0 :: gentoo
- Modified
- License
- vmd
- Keywords
- ~amd64 ~amd64-linux ~x86 ~x86-linux
- USE flags
- cuda gromacs msms povray sqlite tachyon xinerama
v1.9.4_alpha57 :: 0 :: gentoo
- Modified
- License
- vmd
- Keywords
- ~amd64 ~amd64-linux ~x86 ~x86-linux
- USE flags
- cuda gromacs msms povray sqlite tachyon xinerama
USE flags
General
- cuda
- Enable NVIDIA CUDA support (computation on GPU)
- gromacs
- Add support for TNG file format
- msms
- Add support for MSMS SES calcualtion tool
- povray
- Add support for povray raytracer for HQ images
- sqlite
- Add support for sqlite - embedded sql database
- tachyon
- Add support for tachyon raytracer for HQ images
- xinerama
- Add support for querying multi-monitor screen geometry through the Xinerama API
python_single_target
- python3_10
- Build for Python 3.10 only
- python3_11
- Build for Python 3.11 only
- python3_12
- Build for Python 3.12 only
Dependencies
dev-db / sqlite : SQL database engine
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-libs / expat : Stream-oriented XML parser library
dev-python / numpy : Fast array and numerical python library
dev-util / nvidia-cuda-toolkit : NVIDIA CUDA Toolkit (compiler and friends)
media-gfx / tachyon : A portable, high performance parallel ray tracing system
sci-chemistry / gromacs : The ultimate molecular dynamics simulation package
sci-libs / netcdf : Scientific library and interface for array oriented data access
virtual / opengl : Virtual for OpenGL implementation
x11-libs / fltk : C++ user interface toolkit for X and OpenGL
x11-libs / libXft : X.Org Xft library
x11-libs / libXi : X.Org Xi library
x11-libs / libXinerama : X.Org Xinerama library
Runtime Dependencies
dev-db / sqlite : SQL database engine
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-libs / expat : Stream-oriented XML parser library
dev-python / numpy : Fast array and numerical python library
dev-util / nvidia-cuda-toolkit : NVIDIA CUDA Toolkit (compiler and friends)
media-gfx / povray : The Persistence of Vision Raytracer
media-gfx / tachyon : A portable, high performance parallel ray tracing system
sci-biology / stride : Protein secondary structure assignment from atomic coordinates
sci-chemistry / chemical-mime-data : A collection of data files to add support for chemical MIME types
sci-chemistry / gromacs : The ultimate molecular dynamics simulation package
sci-chemistry / msms-bin : MSMS very efficiently computes triangulations of Solvent Excluded Surfaces
sci-chemistry / surf : Solvent accesible Surface calculator
sci-libs / netcdf : Scientific library and interface for array oriented data access
virtual / opengl : Virtual for OpenGL implementation
x11-libs / fltk : C++ user interface toolkit for X and OpenGL
x11-libs / libXft : X.Org Xft library
x11-libs / libXi : X.Org Xi library
x11-libs / libXinerama : X.Org Xinerama library
x11-misc / xdg-utils : Portland utils for cross-platform/cross-toolkit/cross-desktop interoperability
Bugs
- 836096
- sci-chemistry/vmd: uses variables banned in scope (VariableScope)
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Fix compat with numpy-2 and don't mess with linking
Ebuild forcing linking flags break some utils, point to new location for numpy2 include files Closes: https://bugs.gentoo.org/929763 Thanks-to: he.ousia Closes: https://bugs.gentoo.org/835604 Thanks-to: Hypoon Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alexey Shvetsov · gentoo
sci-chemistry/vmd: enable py3.12
Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: flag-o_matic.eclass is not used
Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Pacho Ramos · gentoo
sci-chemistry/vmd: enable py3.11
Closes: https://bugs.gentoo.org/897204 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: remove py3.8 from PYTHON_COMPAT
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-chemistry/vmd: drop 1.9.4_alpha55
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: drop 1.9.4_alpha51
Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Pacho Ramos · gentoo
sci-chemistry/vmd: add 1.9.4_alpha57
Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Bump to alpha55
Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-chemistry/vmd: PYTHON_MULTI_USEDEP -> PYTHON_USEDEP
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Drop old
Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Bump to 1.9.4_alpha51
Also stop pushing people to play with tar vs tar.gz file as most web browsers properly download tar.gz file at present time, bug #640440 Closes: https://bugs.gentoo.org/640440 Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Remove obsolete values from PYTHON_COMPAT
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Update fetch restriction message
Package-Manager: Portage-3.0.11, Repoman-3.0.2 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Joonas Niilola · gentoo
sci-chemistry/vmd: fix SizeViolation issue
Closes: https://bugs.gentoo.org/748210 Signed-off-by: Joonas Niilola <juippis@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Apply fixes to plugins
Adapt patch to 1.9.4 Closes: https://bugs.gentoo.org/741978 Thanks-to: Hypoon Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-chemistry/vmd: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Allow to apply user patches in plugins
Bug: https://bugs.gentoo.org/show_bug.cgi?id=741978 Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Fix pkg_nofetch message
Bug: https://bugs.gentoo.org/735462 Package-Manager: Portage-3.0.6, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Bump to 1.9.4_alpha43
Bug: https://bugs.gentoo.org/735462 Package-Manager: Portage-3.0.4, Repoman-3.0.1 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Drop old
Package-Manager: Portage-3.0.0, Repoman-2.3.23 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Fix support for current CUDA versions
Package-Manager: Portage-2.3.93, Repoman-2.3.20 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-chemistry/vmd: Switch to PYTHON_MULTI_USEDEP API
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-chemistry/vmd: Revbump post dep change
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-chemistry/vmd: Permit numpy-python2
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Fix /tmp PATH, open .pdb files as pymol does
Package-Manager: Portage-2.3.81, Repoman-2.3.19 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Make repoman more happy
Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Pacho Ramos · gentoo
sci-chemistry/vmd: Multiple fixes and update ebuild
- Longer explanation to download sources files (#640440) - Fix tachyon support (#644122) - Install netcdf plugin (#661636) Bug: https://bugs.gentoo.org/640440 Closes: https://bugs.gentoo.org/644122 Closes: https://bugs.gentoo.org/661636 Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Ben Kohler · gentoo
sci-chemistry/vmd: don't reference ${DISTDIR} in pkg_nofetch
Closes: https://bugs.gentoo.org/663224 Package-Manager: Portage-2.3.59, Repoman-2.3.12 Signed-off-by: Ben Kohler <bkohler@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-chemistry/vmd: Needs to be rebuilt with gromacs updates
Signed-off-by: Pacho Ramos <pacho@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 - Alexey Shvetsov · gentoo
sci-chemistry/vmd: Version bump
Package-Manager: Portage-2.3.16, Repoman-2.3.6 - David Seifert · gentoo
sci-chemistry/vmd: [QA] Add missing python metadata variables
Package-Manager: Portage-2.3.5, Repoman-2.3.2 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - T. Malfatti · gentoo
media-libs/portaudio: Version bump - Pacho Ramos · gentoo
sci-chemistry/vmd: Needs to be rebuilt with netcdf subslot bumps
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Justin Lecher · gentoo
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed