Versions
v1.103.0 :: 0 :: gentoo
- Modified
- License
- BSD GPL-2+
- Keywords
- ~amd64 ~x86
- USE flags
- archive doc hdf5 jkqtplotter python qt6 spglib static-libs test
v1.102.1 :: 0 :: gentoo
- Modified
- License
- BSD GPL-2+
- Keywords
- ~amd64 ~x86
- USE flags
- archive doc hdf5 python qt6 spglib static-libs test
USE flags
General
- archive
- Enable archive support using app-arch/libarchive
- doc
- Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
- hdf5
- Add support for the Hierarchical Data Format v5
- jkqtplotter
- Enable charts and spectra using sci-libs/jkqtplotter
- python
- Add optional support/bindings for the Python language
- qt6
- Add support for the Qt 6 application and UI framework
- spglib
- Find and set the Hall number for a crystal using sci-libs/spglib
- static-libs
- Build static versions of dynamic libraries as well
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
python_single_target
- python3_11
- Build for Python 3.11 only
- python3_12
- Build for Python 3.12 only
- python3_13
- Build for Python 3.13 only
- python3_14
- Build for Python 3.14 only
Dependencies
app-arch / libarchive : Multi-format archive and compression library
dev-cpp / eigen : C++ template library for linear algebra
dev-cpp / nlohmann_json : JSON for Modern C++
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-libs / pugixml : Light-weight, simple, and fast XML parser for C++ with XPath support
dev-python / pybind11 : AST-based Python refactoring library
dev-qt / qtbase : Cross-platform application development framework
dev-qt / qtsvg : SVG rendering library for the Qt6 framework
media-libs / glew : The OpenGL Extension Wrangler Library
sci-chemistry / openbabel : Interconverts file formats used in molecular modeling
sci-libs / hdf5 : General purpose library and file format for storing scientific data
sci-libs / jkqtplotter : Extensive Qt Plotter framework
sci-libs / spglib : Spglib is a C library for finding and handling crystal symmetries
Runtime Dependencies
app-arch / libarchive : Multi-format archive and compression library
dev-cpp / nlohmann_json : JSON for Modern C++
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-libs / pugixml : Light-weight, simple, and fast XML parser for C++ with XPath support
dev-python / pybind11 : AST-based Python refactoring library
dev-qt / qtbase : Cross-platform application development framework
dev-qt / qtsvg : SVG rendering library for the Qt6 framework
media-libs / glew : The OpenGL Extension Wrangler Library
sci-chemistry / openbabel : Interconverts file formats used in molecular modeling
sci-libs / hdf5 : General purpose library and file format for storing scientific data
sci-libs / jkqtplotter : Extensive Qt Plotter framework
sci-libs / spglib : Spglib is a C library for finding and handling crystal symmetries
Depending packages
sci-chemistry / avogadro2 : Advanced molecule editor and visualizer 2
Bugs
- 834732
- sci-libs/avogadrolibs-1.95.1 - /.../gl32.h: error: void _glewActiveTexture(GLenum) redeclared as different kind of entity
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs: drop 1.101.0
Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Part-of: https://codeberg.org/gentoo/gentoo/pulls/48 Signed-off-by: Sam James <sam@gentoo.org> - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs: add 1.103.0
jkqtplotter is now optional, restore genXrd for amd64 Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Part-of: https://codeberg.org/gentoo/gentoo/pulls/48 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Fabian Groffen · gentoo
*/*: drop *-linux keywords
Bug: https://bugs.gentoo.org/473598 Bug: https://bugs.gentoo.org/720224 Signed-off-by: Fabian Groffen <grobian@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs, sci-chemistry/avogadro2: remove old
Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Part-of: https://github.com/gentoo/gentoo/pull/44352 Closes: https://github.com/gentoo/gentoo/pull/44352 Signed-off-by: Sam James <sam@gentoo.org> - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs: add 1.102.1
add python API support (single target only) vtk is replaced by jkqtplotter (new package) for charts Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Part-of: https://github.com/gentoo/gentoo/pull/44352 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs: add 1.101.0
remove mmtf support, deprecated and w/ failing tests Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Part-of: https://github.com/gentoo/gentoo/pull/43908 Closes: https://github.com/gentoo/gentoo/pull/43908 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs: adapt lto/dot-a, cmake4, add DEP
fix lto/ODR violations with pending upstream PR, except with vtk enabled (filter then). add static-libs useflag for qtplugins libraries (previously enabled by default). use dot-a with qt6 even w/o static-libs, because libgwavi.a is required to build avogadro2. bump cmake_min for cmake4 compat. add dev-libs/pegtl in DEPEND, required by vtk's cmake file. Bug: https://bugs.gentoo.org/942463 Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Part-of: https://github.com/gentoo/gentoo/pull/42718 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: drop 1.97.0-r1
Closes: https://bugs.gentoo.org/926352 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs: amend qt5(-)
Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Closes: https://github.com/gentoo/gentoo/pull/41104 Signed-off-by: Sam James <sam@gentoo.org> - Nicolas PARLANT · gentoo
sci-libs/avogadrolibs: add 1.100.0, qt6
update HOMEPAGE switch to qt6 iuse : add spglib (Hall number for a crystal using sci-libs/spglib) fetch avogadrodata for more tests deps : rm molequeue, abandoned and without Qt6 support, client-only bundled rm linguist-tools, no longer required (qm) add dev-cpp/nlohmann_json (since 1.98) add dev-libs/pugixml (since 1.98) add sci-chemistry/openbabel[json] (qtplugins) add dev-libs/mmtf-cpp (mmtf useflag) build opt : rm USE_PROTOCALL (dropped since 1.98.0) rm BUILD_STATIC_PLUGINS, on by default rm OpenGL_GL_PREFERENCE=GLVND, value by default add USE_SYSTEM_GENXRDPATTERN=OFF to use workaround w/ DownloadGenXrdPattern patches : cmake detection for openbabel conditionnal test: Spacegroup (spglib) Closes: https://bugs.gentoo.org/926352 Signed-off-by: Nicolas PARLANT <nicolas.parlant@parhuet.fr> Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: drop 1.95.1-r1
Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
Move {app-doc → app-text}/doxygen
Per the category metadata, app-doc/ is reserved for documentation *files* and not software. Move it to app-text/ where it seems a better fit. Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andrew Ammerlaan · gentoo
sci-libs/avogadrolibs: add 1.97.0
Bug: https://bugs.gentoo.org/832528 Bug: https://bugs.gentoo.org/712962 Bug: https://bugs.gentoo.org/868132 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> - Aritz Erkiaga · gentoo
Backport critical fixes to sci-libs/avogadrolibs
Signed-off-by: Aritz Erkiaga <aerkiaga3@gmail.com> Closes: https://bugs.gentoo.org/868132 Closes: https://github.com/gentoo/gentoo/pull/27128 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/avogadrolibs: fix doc and qt5 args
Closes: https://bugs.gentoo.org/834441 Closes: https://bugs.gentoo.org/834442 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/avogadrolibs: remove USE=static-plugins
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/avogadrolibs: drop 1.93.0
Closes: https://bugs.gentoo.org/765811 Closes: https://bugs.gentoo.org/810505 Closes: https://bugs.gentoo.org/820767 Closes: https://bugs.gentoo.org/834116 Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-libs/avogadrolibs: add 1.95.1
Bug: https://bugs.gentoo.org/765811 Bug: https://bugs.gentoo.org/834116 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/avogadrolibs: apply (upstream) workaround for older hdf5lib API
Bug: https://bugs.gentoo.org/810505 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolic · gentoo
sci-libs/avogadrolibs: Remove old
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas K. Hüttel · gentoo
sci-libs/avogadrolibs: Bundled file patch is still needed in 1.93.0
Package-Manager: Portage-2.3.103, Repoman-2.3.23 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas K. Hüttel · gentoo
sci-libs/avogadrolibs: genXrdPattern changed upstream
genXrdPattern changed upstream, so an update will fail if there's already a file in DISTDIR. Store the file versioned in the Gentoo mirror system. Package-Manager: Portage-2.3.103, Repoman-2.3.23 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-libs/avogadrolibs: Bump to 1.93.0
Closes: https://bugs.gentoo.org/652918 Package-Manager: Portage-2.3.93, Repoman-2.3.20 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Update patch after review, drop unused DEPEND
Package-Manager: Portage-2.3.29, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Drop old snapshot
Package-Manager: Portage-2.3.29, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Add 1.91.0_pre20180415, build w/ Qt 5.11_beta3
Package-Manager: Portage-2.3.29, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Add missing DEPEND on sci-libs/vtk[views]
Package-Manager: Portage-2.3.28, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Add missing DEPEND
Closes: https://bugs.gentoo.org/652918 Package-Manager: Portage-2.3.28, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Fix build with Qt-5.11
Package-Manager: Portage-2.3.28, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Unbundle jsoncpp, fix USE=vtk
Bug: https://bugs.gentoo.org/649860 Closes: https://bugs.gentoo.org/624242 Package-Manager: Portage-2.3.28, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Drop 0.9.0, fails to build
Bug: https://bugs.gentoo.org/645248 Package-Manager: Portage-2.3.28, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Fix DEPEND
Package-Manager: Portage-2.3.28, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Add 1.91.0_p20180406 snapshot
Closes: https://bugs.gentoo.org/645248 Closes: https://bugs.gentoo.org/649862 Closes: https://bugs.gentoo.org/588706 Closes: https://bugs.gentoo.org/577214 Package-Manager: Portage-2.3.28, Repoman-2.3.9 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Drop old
Package-Manager: Portage-2.3.19, Repoman-2.3.6 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: D -> ED
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: Adjust Qt5 dependencies
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Andreas Sturmlechner · gentoo
sci-libs/avogadrolibs: 0.9.0 version bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - Justin Lecher · gentoo
Merge branch 'SoapZaNet-avogadro'
* SoapZaNet-avogadro: sci-libs/avogadrolibs: Add patch to fix underlinking with -Wl,--no-undefined. sci-chemistry/molequeue: Version bump, required to unbundle third-party libraries. - Ted Tanberry · gentoo
sci-libs/avogadrolibs: Add patch to fix underlinking with -Wl,--no-undefined.
Package-Manager: portage-2.2.26 - Justin Lecher · gentoo
sci-libs/avogadrolibs: Version Bump
Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed