sci-libs / cholmod

Sparse Cholesky factorization and update/downdate library

Official package sites : https://people.engr.tamu.edu/davis/suitesparse.html ·

v4.0.3 :: 0/4 :: gentoo (Masked by set 6678)

Modified
License
LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )
Keywords
~amd64 ~amd64-linux ~arm ~arm64 ~hppa ~ia64 ~loong ~mips ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~x86-linux
USE flags
cholesky cuda doc matrixops modify openmp partition supernodal test

v3.0.14-r1 :: 0/3 :: gentoo

Modified
License
LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )
Keywords
amd64 arm arm64 ppc64 sparc x86 ~amd64-linux ~arm64-macos ~hppa ~ia64 ~loong ~mips ~ppc ~riscv ~s390 ~x64-macos ~x86-linux
USE flags
cuda doc lapack matrixops modify partition

v3.0.13 :: 0 :: gentoo

Modified
License
LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )
Keywords
amd64 arm arm64 ppc64 x86 ~amd64-linux ~hppa ~ia64 ~mips ~ppc ~sparc ~x86-linux
USE flags
cuda doc lapack matrixops modify partition

General

cholesky
Enable sparse Cholesky factorisation
cuda
Enable NVIDIA CUDA support (computation on GPU)
doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
lapack
Add support for the virtual/lapack numerical library
matrixops
Support basic sparse and dense matrix operations (add, multiply, scale, et cetera)
modify
Enable Cholesky-modification routines like update, downdate, row-add, and row-delete
openmp
Build support for the OpenMP (support parallel computing), requires >=sys-devel/gcc-4.2 built with USE="openmp"
partition
Enable graph partitioning and graph-partition-based orderings through sci-libs/metis (using a bundled fork in 4.0.0+) or sci-libs/parmetis
supernodal
supernodal cholesky factorisation
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

abi_mips

n32
64-bit (32-bit pointer) libraries
n64
64-bit libraries
o32
32-bit libraries

abi_s390

32
32-bit (s390) libraries
64
64-bit (s390x) libraries

abi_x86

32
32-bit (x86) libraries
64
64-bit (amd64) libraries
x32
x32 ABI libraries

dev-util / nvidia-cuda-toolkit : NVIDIA CUDA Toolkit (compiler and friends)

sci-libs / amd : Library to order a sparse matrix prior to Cholesky factorization

sci-libs / camd : Library to order a sparse matrix prior to Cholesky factorization

sci-libs / ccolamd : Constrained Column approximate minimum degree ordering algorithm

sci-libs / colamd : Column approximate minimum degree ordering algorithm

sci-libs / metis : A package for unstructured serial graph partitioning

sci-libs / suitesparseconfig : Common configurations for all packages in suitesparse

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

x11-drivers / nvidia-drivers : NVIDIA Accelerated Graphics Driver

dev-util / nvidia-cuda-toolkit : NVIDIA CUDA Toolkit (compiler and friends)

sci-libs / amd : Library to order a sparse matrix prior to Cholesky factorization

sci-libs / camd : Library to order a sparse matrix prior to Cholesky factorization

sci-libs / ccolamd : Constrained Column approximate minimum degree ordering algorithm

sci-libs / colamd : Column approximate minimum degree ordering algorithm

sci-libs / metis : A package for unstructured serial graph partitioning

sci-libs / suitesparseconfig : Common configurations for all packages in suitesparse

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

x11-drivers / nvidia-drivers : NVIDIA Accelerated Graphics Driver

dev-cpp / eigen : C++ template library for linear algebra

dev-lang / julia : High-performance programming language for technical computing

dev-python / cvxopt : Python package for convex optimization

games-strategy / naev : 2D space trading and combat game, in a similar vein to Escape Velocity

sci-libs / ceres-solver : Nonlinear least-squares minimizer

sci-libs / coinor-clp : COIN-OR linear programming solver

sci-libs / hipSOLVER : CU / ROCM agnostic marshalling library for LAPACK routines on the GPU

sci-libs / klu : Sparse LU factorization for circuit simulation

sci-libs / spqr : Multithreaded multifrontal sparse QR factorization library

sci-libs / suitesparse : Metapackage for a suite of sparse matrix tools

sci-libs / umfpack : Unsymmetric multifrontal sparse LU factorization library

sci-mathematics / octave : High-level interactive language for numerical computations

sci-mathematics / petsc : Portable, Extensible Toolkit for Scientific Computation

711540
sci-libs/cholmod-3.0.13 : configure: error: Could not find ccolamd library
829502
sci-libs/suitesparse to 5.10.1 (and related) version bump request (5.4.0 is blocking cleanup of sci-libs/cholmod-3.0.13)
908858
sci-libs/cholmod-4.0.3 installs '.a' files without static-libs USE

6678
Michał Górny
suitesparseconfig-7.0.0 fails to build with multilib enabled because of dependencies that cannot be satisfied. All the other packages require it. Bug #908851.
  • =sci-libs/amd-3.0.3
  • =sci-libs/btf-2.0.3
  • =sci-libs/camd-3.0.3
  • =sci-libs/ccolamd-3.0.3
  • =sci-libs/cholmod-4.0.3
  • =sci-libs/colamd-3.0.3
  • =sci-libs/cxsparse-4.0.3
  • =sci-libs/klu-2.0.3
  • =sci-libs/ldl-3.0.3
  • =sci-libs/spqr-3.0.3
  • =sci-libs/suitesparseconfig-7.0.0
  • =sci-libs/umfpack-6.1.0
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Eli Schwartz · gentoo
sci-libs/cholmod: fix missing autotools in src_prepare
Fixes regression caused by introducing a gentoo patch that modifies Makefile.am, but doesn't guarantee that it is regenerated in src_configure() -- or indeed that it has the necessary dependencies. Fixes: 6c0474cc8a08172cdc244af680edba8be5ada95b Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
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Paul Zander · gentoo
sci-libs/cholmod: 3.0.14-r1 change slot to 0/3
The .so name changed from libcholmod.so.0 to libcholmod.so.3 so we need to adjust the subslot to cause rebuilds after the upgrade. Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/34543 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Paul Zander · gentoo
sci-libs/cholmod: fix cuda build
- include cuda patch from https://bugs.gentoo.org/715610#c16 - make use of cuda.eclass for nvcc Closes: https://bugs.gentoo.org/913921 Closes: https://bugs.gentoo.org/904973 Closes: https://bugs.gentoo.org/715610 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/34020 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
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Benda Xu · gentoo
dev-python/scipy: keyword it and its dependences.
keyword 1.11.1 for ~arm64-macos, ~x64-macos dev-python/gast: keyword 0.5.3-r1 for ~arm64-macos, ~x64-macos dev-python/beniget: keyword 0.4.1-r1 for ~arm64-macos, ~x64-macos dev-python/pythran: keyword 0.13.1 for ~arm64-macos, ~x64-macos sci-libs/gklib: keyword 5.1.1_p20230327-r1 for ~arm64-macos, ~x64-macos sci-libs/metis: keyword 5.2.1-r2 for ~arm64-macos, ~x64-macos sci-libs/ccolamd: keyword 2.9.6 for ~arm64-macos, ~x64-macos sci-libs/camd: keyword 2.4.6-r1 for ~arm64-macos, ~x64-macos sci-libs/colamd: keyword 2.9.6 for ~arm64-macos, ~x64-macos sci-libs/cholmod: keyword 3.0.14 for ~arm64-macos, ~x64-macos sci-libs/suitesparseconfig: keyword 5.4.0 for ~arm64-macos, ~x64-macos sci-libs/amd: keyword 2.4.6-r1 for ~arm64-macos, ~x64-macos sci-libs/umfpack: keyword 5.7.9 for ~arm64-macos, ~x64-macos sci-libs/arpack: keyword 3.8.0 for ~arm64-macos, ~x64-macos dev-python/charset-normalizer: keyword 3.2.0 for ~arm64-macos, ~x64-macos dev-python/requests: keyword 2.31.0 for ~arm64-macos, ~x64-macos dev-python/pooch: keyword 1.7.0 for ~arm64-macos, ~x64-macos Signed-off-by: Benda Xu <heroxbd@gentoo.org>
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Michael Orlitzky · gentoo
sci-libs/cholmod: revert "sci-libs/cholmod: drop 3.0.13"
This reverts commit 1f96092b44d5d5ccc9d703328630366f33b305dc. The stable sci-libs/suitesparse-5.4.0 has, RDEPEND=" ... ~sci-libs/cholmod-3.0.13[cuda?,doc?,partition?,lapack?] which won't accept the stable cholmod-3.0.14 that I thought could replace 3.0.13. Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
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Michael Orlitzky · gentoo
sci-libs/cholmod: drop 3.0.13
Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
François Bissey · gentoo
sci-libs/cholmod: add 4.0.3
Signed-off-by: François Bissey <frp.bissey@gmail.com> Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/cholmod: destabilize for ~ppc
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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WANG Xuerui · gentoo
sci-libs/cholmod: keyword 3.0.14 for ~loong
Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
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Sam James · gentoo
sci-libs/cholmod: Keyword 3.0.14 s390, #862330
Signed-off-by: Sam James <sam@gentoo.org>
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Marek Szuba · gentoo
*/*: update sci-libs/{,par}metis revdeps
ParMETIS on the one hand no longer installs bundled METIS and on the other unconditionally depends on MPI. Therefore, only keep it in ebuilds which use MPI themselves and depend on METIS directly otherwise. Note that some of the alleged sci-libs/parmetis revdeps might in fact not use even when they use MPI, as none of these revdeps have actually explicitly requested sci-libs/parmetis[mpi]. Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Marek Szuba · gentoo
sci-libs/cholmod: keyword 3.0.14 for ~riscv
Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Sam James · gentoo
sci-libs/cholmod: Stabilize 3.0.14 amd64, #765760
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/cholmod: Stabilize 3.0.14 ppc, #765760
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/cholmod: Stabilize 3.0.14 x86, #765760
Signed-off-by: Sam James <sam@gentoo.org>
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Andreas Sturmlechner · gentoo
sci-libs/cholmod: Drop 2.1.2, EAPI5--
Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
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Sergei Trofimovich · gentoo
sci-libs/cholmod: stable 3.0.14 for ppc64
stable wrt bug #765760 Package-Manager: Portage-3.0.14, Repoman-3.0.2 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
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Sam James · gentoo
sci-libs/cholmod: Stabilize 3.0.14 arm64, #765760
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/cholmod: Stabilize 3.0.14 sparc, #765760
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/cholmod: Stabilize 3.0.14 arm, #765760
Signed-off-by: Sam James <sam@gentoo.org>
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Fabian Groffen · gentoo
sci-libs/cholmod: drop x86-macos
Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Fabian Groffen <grobian@gentoo.org>
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Sam James · gentoo
sci-libs/cholmod: Stabilize 3.0.13 arm, #709830
Signed-off-by: Sam James <sam@gentoo.org>
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Miroslav Šulc · gentoo
sci-libs/cholmod: bump to 3.0.14
removed unnecessary version specifiers Closes: https://bugs.gentoo.org/745444 Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Miroslav Šulc <fordfrog@gentoo.org>
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Michael Mair-Keimberger · gentoo
sci-libs/cholmod: update HOMEPAGE, use https
Closes: https://github.com/gentoo/gentoo/pull/17541 Package-Manager: Portage-3.0.6, Repoman-3.0.1 Signed-off-by: Michael Mair-Keimberger <m.mairkeimberger@gmail.com> Signed-off-by: Conrad Kostecki <conikost@gentoo.org>
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David Seifert · gentoo
sci-libs/cholmod: Remove libtool archives
Package-Manager: Portage-3.0.4, Repoman-3.0.1 Signed-off-by: David Seifert <soap@gentoo.org>
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Andreas Sturmlechner · gentoo
sci-libs/cholmod: Drop to ~hppa
No stable revdeps. Package-Manager: Portage-3.0.0, Repoman-2.3.23 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
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Sam James · gentoo
sci-libs/cholmod: x86 stable (bug #716960)
Package-Manager: Portage-2.3.103, Repoman-2.3.23 Signed-off-by: Sam James <sam@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/cholmod: amd64 stable wrt bug #716960
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Sam James (sam_c) · gentoo
sci-libs/cholmod: arm64 stable (bug #716960)
Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Sam James (sam_c) <sam@cmpct.info> Signed-off-by: Mart Raudsepp <leio@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/cholmod: ppc64 stable wrt bug #716960
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/cholmod: ppc stable wrt bug #716960
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Michael Orlitzky · gentoo
sci-libs/cholmod: new version 3.0.13.
Update to EAPI=7 and fix the HOMEPAGE, SRC_URI, and LICENSE. This is part of a larger SuiteSparse v5.4.0 upgrade thanks to François Bissey whose sage-on-gentoo ebuilds I'm using. There's a newer release (v5.7.1) of SuiteSparse, but v5.4.0 has seen more testing. This new version also refactors the package's USE flags, because USE=minimal was being used to control the installation of several different modules that all do different things. It's much better for users to have three individual flags that control those options. Moreover, with USE=minimal, there was a conflict between the "minimal" and "metis" flags; both would try to control the --with-partition option. Finally, the "metis" USE flag was dropped in favor of the name "partition". Closes: https://bugs.gentoo.org/526910 Closes: https://bugs.gentoo.org/682838 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
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Michał Górny · gentoo
sci-libs: Remove *-fbsd KEYWORDS
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Aaron Bauman · gentoo
sci-libs/cholmod: arm64 stable
Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.12 RepoMan-Options: --include-arches="arm64"
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Justin Lecher · gentoo
sci-libs/cholmod: fix metis dep
Closes: https://bugs.gentoo.org/672000 Package-Manager: Portage-2.3.53, Repoman-2.3.12 Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Justin Lecher · gentoo
sci-libs/cholmod: fix metis dep
Closes: https://bugs.gentoo.org/672000 Package-Manager: Portage-2.3.53, Repoman-2.3.12 Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Justin Lecher · gentoo
sci-libs/cholmod: Update HOMPAGE
Package-Manager: Portage-2.3.53, Repoman-2.3.12 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Alexis Ballier · gentoo
sci-libs/cholmod: keyword ~arm64
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Sergei Trofimovich · gentoo
sci-libs/cholmod: ia64 keyworded, bug #575366
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Tobias Klausmann · gentoo
sci-libs/cholmod-2.1.2-r0: add ~alpha keyword
Gentoo-Bug: 575366 Package-Manager: portage-2.3.0_rc1
Justin Lecher · gentoo
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed