sci-libs / hdf

General purpose library and format for storing scientific data

Official package sites : https://www.hdfgroup.org/hdf4.html ·

The Hierarchical Data Format is a general purpose library and file format for storing scientific data. HDF can store two primary objects: datasets and groups. A dataset is essentially a multidimensional array of data elements, and a group is a structure for organizing objects in an HDF file. Using these two basic objects, one can create and store almost any kind of scientific data structure, such as images, arrays of vectors, and structured and unstructured grids. You can also mix and match them in HDF files according to your needs.

v4.2.15-r1 :: 0 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 ppc x86 ~amd64-linux ~arm ~ia64 ~riscv ~x86-linux
USE flags
examples fortran static-libs szip test

General

examples
Install examples, usually source code
fortran
Add support for fortran
static-libs
Build static versions of dynamic libraries as well
szip
Use the szip compression library
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

net-libs / libtirpc : Transport Independent RPC library (SunRPC replacement)

sys-libs / zlib : Standard (de)compression library

virtual / fortran : Virtual for Fortran Compiler

virtual / jpeg : Virtual to select between libjpeg-turbo and IJG jpeg for source-based packages

virtual / szip : Virtual for szip compression drop-in replacements

net-libs / libtirpc : Transport Independent RPC library (SunRPC replacement)

sys-libs / zlib : Standard (de)compression library

virtual / fortran : Virtual for Fortran Compiler

virtual / jpeg : Virtual to select between libjpeg-turbo and IJG jpeg for source-based packages

virtual / szip : Virtual for szip compression drop-in replacements

dev-lang / gdl : GNU Data Language

dev-perl / Alien-HDF4 : Encapsulate install info for HDF4

dev-perl / PDL : Perl Data Language for scientific computing

sci-libs / mathgl : Math Graphics Library

sci-libs / netcdf : Scientific library and interface for array oriented data access

sci-misc / h5utils : Utilities for visualization and conversion of HDF5 files

661156
sci-libs/hdf: Multiple vulnerabilities
715632
sci-libs/hdf-4.2.13-r1 : local_nc.h: fatal error: rpc/types.h: No such file or directory
831725
sci-libs/hdf-4.2.15-r1 fails to compile: ld.lld: error: cant create dynamic relocation R_X86_64_32 against local symbol in readonly segment; recompile object files with -fPIC or pass -Wl,-z,notext to allow text relocations in the output
862720
sci-libs/hdf-4.2.15-r1 fails to compile (lto): x86_64-pc-linux-gnu-gfortran: error: unrecognized command-line option -V
874414
sci-libs/hdf-4.2.15-r1 - buffer.c: error: call to undeclared function time; ISO C99 and later do
Repository mirror & CI · gentoo
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Andreas Sturmlechner · gentoo
sci-libs/hdf: Drop 4.2.13-r1 and 4.2.15 (r0)
Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
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Jakov Smolić · gentoo
sci-libs/hdf: Stabilize 4.2.15-r1 x86, #816390
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Sam James · gentoo
sci-libs/hdf: Stabilize 4.2.15-r1 amd64, #816390
Signed-off-by: Sam James <sam@gentoo.org>
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Yixun Lan · gentoo
sci-libs/hdf: keyword ~riscv
Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Yixun Lan <dlan@gentoo.org>
Yixun Lan · gentoo
sci-libs/hdf: fix riscv64 test error
the original patch took from https://sources.debian.org/patches/libhdf4/4.2.15-4/riscv64.diff/ Bug: https://bugs.gentoo.org/664856 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Yixun Lan <dlan@gentoo.org>
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Sam James · gentoo
sci-libs/hdf: Keyword 4.2.15-r1 arm, #804927
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/hdf: Stabilize 4.2.15-r1 ppc, #816390
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf: fix typo
Had switched it back to ${FILESDIR} to add an extra patch but forgot to switch it back again apparently. Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf: drop -riscv for 4.2.15-r1 with new arch. support
This should now support riscv, but will leave keywording for the arch team of course. But dropping -riscv as it's no longer known-broken. Bug: https://bugs.gentoo.org/664856 Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/hdf: support additional architectures
Pull in patches from Fedora [0] and Debian [1] with some simple rebasing (added riscv, hppa, sparc64 by cherry-picking extra bits too). All references included in the respective patches within the patch tarball too. This should, in total, give us: - hppa - sparc{,64} - arm - arm64 - ppc - ppc64(le?) - s390 [0] https://src.fedoraproject.org/rpms/hdf/tree/rawhide [1] https://sources.debian.org/patches/libhdf4/4.2.15-4/ Bug: https://bugs.gentoo.org/664856 Signed-off-by: Sam James <sam@gentoo.org>
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Jakov Smolić · gentoo
sci-libs/hdf: Stabilize 4.2.15 x86, #816390
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-libs/hdf: Stabilize 4.2.15 amd64, #816390
Signed-off-by: Sam James <sam@gentoo.org>
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Marek Szuba · gentoo
sci-libs/hdf: keyword 4.2.15 for -riscv
Architecture not supported; see Bug #664856. Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Andrew Ammerlaan · gentoo
sci-libs/hdf: add version 4.2.15
Closes: https://bugs.gentoo.org/771648 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
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Conrad Kostecki · gentoo
sci-libs/hdf: drop deprecated ltprune eclass
Signed-off-by: Conrad Kostecki <conikost@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org>
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Repository mirror & CI · gentoo
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Sam James · gentoo
sci-libs/hdf: add bug reference to gcc 10 workaround
Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/hdf: workaround gcc 10 (fortran) failure
Closes: https://bugs.gentoo.org/723014 Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
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Jakov Smolic · gentoo
sci-libs/hdf: Remove old
Closes: https://bugs.gentoo.org/716530 Closes: https://bugs.gentoo.org/664856 Closes: https://bugs.gentoo.org/639390 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
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Jakov Smolic · gentoo
sci-libs/hdf: Remove old
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
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Alexey Sokolov · gentoo
sci-libs/hdf: update homepage
Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alexey Sokolov <alexey+gentoo@asokolov.org> Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
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Matt Turner · gentoo
*/*: Drop stable ia64 keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org>
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David Seifert · gentoo
sci-libs/hdf: [QA] inherit ltprune.eclass directly
Package-Manager: Portage-2.3.88, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
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Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Aaron Bauman · gentoo
sci-libs/hdf: drop old EAPI
Signed-off-by: Aaron Bauman <bman@gentoo.org>
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Rolf Eike Beer · gentoo
sci-libs/hdf: upstream lacks sparc platform support
Package-Manager: Portage-2.3.40, Repoman-2.3.9 RepoMan-Options: --include-arches="sparc"
Mikle Kolyada · gentoo
sci-libs/hdf: ppc stable wrt bug #630868
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Thomas Deutschmann · gentoo
sci-libs/hdf: x86 stable (bug #630868)
Package-Manager: Portage-2.3.34, Repoman-2.3.9
Mikle Kolyada · gentoo
sci-libs/hdf: amd64 stable wrt bug #630868
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Sergei Trofimovich · gentoo
sci-libs/hdf: stable 4.2.13-r1 for ia64, bug #630868
Bug: https://bugs.gentoo.org/630868 Package-Manager: Portage-2.3.36, Repoman-2.3.9 RepoMan-Options: --include-arches="ia64"
Andreas K. Hüttel · gentoo
sci-libs/hdf: Revbump that uses libtirpc, bug 630868
Patches by Bernd Feige. This still needs to be stabilized. Bug: https://bugs.gentoo.org/630868 Package-Manager: Portage-2.3.31, Repoman-2.3.9
Sergei Trofimovich · gentoo
sci-libs/hdf: stable 4.2.8 for ia64, bug #627018
Package-Manager: Portage-2.3.8, Repoman-2.3.3 RepoMan-Options: --include-arches="ia64"
Sébastien Fabbro · gentoo
sci-libs/hdf: version bump
Package-Manager: Portage-2.3.6, Repoman-2.3.3
Sergei Trofimovich · gentoo
sci-libs/hdf: ia64 keyworded, bug #615510
Package-Manager: Portage-2.3.6, Repoman-2.3.2 RepoMan-Options: --include-arches="ia64"
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Sébastien Fabbro · gentoo
sci-libs/hdf: Version bump
Package-Manager: portage-2.2.27
Sébastien Fabbro · gentoo
sci-libs/hdf: switch to virtual/szip
Package-Manager: portage-2.2.27
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed