sci-libs / hdf5

General purpose library and file format for storing scientific data

Official package sites : https://github.com/HDFGroup/hdf5/ ·

HDF5 is a file format and library for storing scientific data. HDF5 was designed and implemented to address the deficiencies of HDF4.x. It has a more powerful and flexible data model, supports files larger than 2 GB, and supports parallel I/O.

v1.14.4_p3-r1 :: 0/311 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~arm64-macos ~hppa ~loong ~riscv ~s390 ~x64-macos ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip test threads unsupported zlib

v1.14.4_p2 :: 0/1.14.4 :: gentoo

Modified
License
NCSA-HDF
Keywords
~alpha ~amd64 ~amd64-linux ~arm ~arm64 ~arm64-macos ~hppa ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x64-macos ~x86 ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip test threads unsupported zlib

v1.14.3-r1 :: 0/1.14.3 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~arm64-macos ~hppa ~loong ~riscv ~s390 ~x64-macos ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip test threads unsupported zlib

v1.14.2 :: 0/1.14.2 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~arm64-macos ~hppa ~loong ~riscv ~s390 ~x64-macos ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip test threads unsupported zlib

v1.14.1 :: 0/1.14.1 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 arm arm64 ppc ppc64 sparc ~alpha ~amd64-linux ~arm64-macos ~hppa ~loong ~riscv ~s390 ~x64-macos ~x86 ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip test threads unsupported zlib

v1.12.2-r6 :: 0/1.12.2 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~hppa ~loong ~riscv ~s390 ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip threads unsupported zlib

v1.12.2-r4 :: 0/1.12.2 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~hppa ~riscv ~s390 ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip threads unsupported zlib

v1.10.5-r1 :: 0/1.10.5 :: gentoo

Modified
License
NCSA-HDF
Keywords
amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~hppa ~riscv ~x86-linux
USE flags
cxx debug examples fortran hl mpi szip threads unsupported zlib

General

cxx
Build support for C++ (bindings, extra libraries, code generation, ...)
debug
Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
examples
Install examples, usually source code
fortran
Add support for fortran
hl
Enable high level API (https://support.hdfgroup.org/HDF5/doc/HL/index.html)
mpi
Add MPI (Message Passing Interface) layer to the apps that support it
szip
Use the szip compression library
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
threads
Add threads support for various packages. Usually pthreads
unsupported
Enable unsupported combinations of configuration options
zlib
Add support for zlib compression

dev-build / autoconf : Used to create autoconfiguration files

dev-build / libtool : A shared library tool for developers

sys-libs / zlib : Standard (de)compression library

virtual / fortran : Virtual for Fortran Compiler

virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation

virtual / szip : Virtual for szip compression drop-in replacements

sys-libs / zlib : Standard (de)compression library

virtual / fortran : Virtual for Fortran Compiler

virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation

virtual / szip : Virtual for szip compression drop-in replacements

dev-lang / gdl : GNU Data Language

dev-libs / starpu : Unified runtime system for heterogeneous multicore architectures

dev-python / h5py : Simple Python interface to HDF5 files

dev-python / netcdf4 : Python/numpy interface to the netCDF C library

dev-python / tables : Hierarchical datasets for Python

dev-util / diffoscope : Will try to get to the bottom of what makes files or directories different

media-gfx / alembic : Open framework for storing and sharing scene data

media-gfx / freecad : Qt based Computer Aided Design application

media-libs / Field3D : A library for storing voxel data

media-libs / opencv : A collection of algorithms and sample code for various computer vision problems

media-libs / vigra : C++ computer vision library emphasizing customizable algorithms and structures

sci-biology / kallisto : Near-optimal RNA-Seq quantification

sci-biology / mothur : A suite of algorithms for ecological bioinformatics

sci-chemistry / avogadro2 : Advanced molecule editor and visualizer 2

sci-chemistry / gromacs : The ultimate molecular dynamics simulation package

sci-chemistry / votca : Versatile Object-oriented Toolkit for Coarse-graining Applications

sci-electronics / gazebo : A 3D multiple robot simulator with dynamics

sci-geosciences / qgis : User friendly Geographic Information System

sci-libs / HighFive : Header-only C++ interface for libhdf5

sci-libs / avogadrolibs : Advanced molecule editor and visualizer 2 - libraries

sci-libs / cgnslib : CFD General Notation System standard library

sci-libs / dealii : Solving partial differential equations with the finite element method

sci-libs / flann : Fast approximate nearest neighbor searches in high dimensional spaces

sci-libs / flann : Fast approximate nearest neighbor searches in high dimensional spaces

sci-libs / gdal : Translator library for raster geospatial data formats (includes OGR support)

sci-libs / gmsh : Three-dimensional finite element mesh generator

sci-libs / mathgl : Math Graphics Library

sci-libs / matio : Library for reading and writing matlab files

sci-libs / med : A library to store and exchange meshed data or computation results

sci-libs / netcdf : Scientific library and interface for array oriented data access

sci-libs / silo : A mesh and field I/O library and scientific database

sci-libs / trilinos : Scientific library collection for large scale problems

sci-libs / vtk : The Visualization Toolkit

sci-libs / xdmf2 : eXtensible Data Model and Format

sci-mathematics / octave : High-level interactive language for numerical computations

sci-mathematics / petsc : Portable, Extensible Toolkit for Scientific Computation

sci-misc / h5utils : Utilities for visualization and conversion of HDF5 files

sci-physics / espresso : Extensible Simulation Package for Research on Soft matter

sci-physics / geant : Toolkit for simulation of passage of particles through matter

sci-physics / lammps : Large-scale Atomic/Molecular Massively Parallel Simulator

sci-physics / pythia : Lund Monte Carlo high-energy physics event generator

sci-physics / rivet : Rivet toolkit (Robust Independent Validation of Experiment and Theory)

sci-visualization / gwyddion : Framework for Scanning Mode Microscopy data analysis

sci-visualization / labplot : Scientific data analysis and visualisation based on KDE Frameworks

sci-visualization / paraview : Powerful scientific data visualization application

sys-cluster / slurm : A Highly Scalable Resource Manager

560964
sci-libs/hdf5 - hdf5-1.8.9-mpicxx.patch causes macro redefinition warnings with clang-3.7
661158
sci-libs/hdf5: Multiple vulnerabilities
675606
sci-libs/hdf5-1.8.21 - pkg-config files are not generated
682794
sci-libs/hdf5-1.10.5 USE="fortran mpi" - FATAL ERROR: Cannot read module file 'mpi.mod' opened at (1), because it was created by a different version of GNU Fortran
714024
sci-libs/hdf5: multiple vulnerabilities
741438
sci-libs/hdf5-1.10.5-r1 fails tests
808731
media-libs/vigra[hdf5] with >=sci-libs/hdf5-1.12: hdf5impex.cxx: too few arguments to function H5Oget_info_by_name3
808733
[TRACKER] sci-libs/hdf5-1.12 support
817770
sci-libs/hdf5-1.12.1-r1 does not respect CFLAGS
862759
sci-libs/hdf5-1.10.5-r1 installs pre-stripped files
866091
sci-libs/hdf5: multiple vulnerabilities
898282
sci-libs/hdf5-1.10.5-r1 fails to compile (MUSL-CLANG-SYSTEM): H5Odeprec.c:141:8: error: call to undeclared function H5CX_set_apl; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
905136
sci-libs/hdf5: heap buffer overread
918623
sci-libs/hdf5: multiple vulnerabilities
926311
sci-libs/hdf5-1.10.5-r1 fails to compile: expr: syntax error: unexpected argument 1000000
930089
sci-libs/hdf5: Multiple vulnerabilities
930143
sci-libs/hdf5-1.14.4_p2 - No such file or directory
945964
sci-libs/vtk-9.3.1[cgns] fails to compile with sci-libs/hdf5[-cxx] CMake error: "missing: HDF5_INCLUDE_DIRS"
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.4_p3-r1 amd64, #945550
Signed-off-by: Sam James <sam@gentoo.org>
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Merge updates from master
Jakov Smolić · gentoo
sci-libs/hdf5: Stabilize 1.14.4_p3-r1 x86, #945550
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Merge updates from master
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.4_p3-r1 ppc, #945550
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.4_p3-r1 arm, #945550
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.4_p3-r1 arm64, #945550
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.4_p3-r1 ppc64, #945550
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.4_p3-r1 sparc, #945550
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Michał Górny · gentoo
sci-libs/hdf5: Fix subslot for another SOVERSION change
This time SOVERSION was changed within a patch release, so let's replace that PV magic with the actual SOVERSION. Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Michał Górny · gentoo
sci-libs/hdf5: Bump to 1.14.4_p3
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Arthur Zamarin · gentoo
*/*: unkeyword ~ia64
Change was created by running the following command:: ekeyword ^ia64 */*/*.ebuild Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: add explanatory comment for SLOT
See https://github.com/HDFGroup/hdf5/commits/hdf5_1_14_4/config/lt_vers.am. Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: add 1.14.4_p2
Drop LTO filtering as it's fixed upstream. Bug: https://bugs.gentoo.org/922800 Bug: https://bugs.gentoo.org/930089 Signed-off-by: Sam James <sam@gentoo.org>
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Matoro Mahri · gentoo
sci-libs/hdf5: Stabilize 1.14.3-r1 sparc, #923536
Signed-off-by: Matoro Mahri <matoro_gentoo@matoro.tk> Signed-off-by: Ionen Wolkens <ionen@gentoo.org>
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Eli Schwartz · gentoo
sci-libs/hdf5: suppress LTO due to compile errors
It uses fortran code that fails with lto-type-mismatch Bug: https://bugs.gentoo.org/922800 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.3-r1 arm64, #923536
Signed-off-by: Sam James <sam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.3-r1 x86, #923536
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.3-r1 amd64, #923536
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.3-r1 ppc64, #923536
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.3-r1 arm, #923536
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.3-r1 ppc, #923536
Signed-off-by: Sam James <sam@gentoo.org>
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Michał Górny · gentoo
Move {sys-devel → dev-build}/libtool
Signed-off-by: Michał Górny <mgorny@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/34807 Signed-off-by: Michał Górny <mgorny@gentoo.org>
Michał Górny · gentoo
Move {sys-devel → dev-build}/autoconf
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.2 ppc, #920131
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Eli Schwartz · gentoo
sci-libs/hdf5: fix broken examplesdir support
Since at least upstream version 1.12.2, upstream added a configure option to choose the examples directory. It was no longer hardcoded in Makefile.am, which means the sed fixup did not work, but also the option wasn't passed. Upstream commit: https://github.com/HDFGroup/hdf5/commit/b8a93a7224114739e42f32aaf62ae64fd1aad33e iwdevtools: ``` * SED: the following did not cause any changes * sed -e "s:hdf5_examples:doc/${PF}/examples:g" -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die; * no-op: -e s:hdf5_examples:doc/hdf5-1.12.2-r4/examples:g ``` Make sure the option is correctly passed. Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/34335 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: add 1.14.3
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/hdf5: fix -Werror mangling, rebase patches
Closes: https://bugs.gentoo.org/917448 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.2 ppc64, #920131
Signed-off-by: Sam James <sam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.2 amd64, #920131
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.2 arm64, #920131
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.2 x86, #920131
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.2 arm, #920131
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.2 sparc, #920131
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: add 1.14.2
Signed-off-by: Sam James <sam@gentoo.org>
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Benda Xu · gentoo
dev-python/h5py: keyword it and its dependencies for ~arm64-macos.
dev-python/six: keyword 1.16.0-r1 for ~arm64-macos dev-python/regex: keyword 2023.6.3 for ~arm64-macos dev-python/python-dateutil: keyword 2.8.2-r1 for ~arm64-macos dev-python/idna: keyword 3.4 for ~arm64-macos dev-python/attrs: keyword 23.1.0 for ~arm64-macos dev-python/numpy: keyword 1.24.4-r1 for ~arm64-macos dev-python/jsonschema: keyword 4.17.3 for ~arm64-macos dev-python/arrow: keyword 1.2.3 for ~arm64-macos dev-python/fqdn: keyword 1.5.1-r2 for ~arm64-macos dev-python/hatch-fancy-pypi-readme: keyword 23.1.0 for ~arm64-macos dev-python/hatch-vcs: keyword 0.3.0 for ~arm64-macos dev-python/isoduration: keyword 20.11.0-r1 for ~arm64-macos dev-python/lark: keyword 1.1.5 for ~arm64-macos dev-python/pkgconfig: keyword 1.5.5-r1 for ~arm64-macos dev-python/poetry-core: keyword 1.6.1 for ~arm64-macos dev-python/pyrsistent: keyword 0.19.3 for ~arm64-macos dev-python/rfc3339-validator: keyword 0.1.4-r1 for ~arm64-macos dev-python/rfc3986-validator: keyword 0.1.1-r1 for ~arm64-macos dev-python/rfc3987: keyword 1.3.8-r2 for ~arm64-macos dev-python/strict-rfc3339: keyword 0.7-r2 for ~arm64-macos dev-python/webcolors: keyword 1.13 for ~arm64-macos dev-python/uri_template: keyword 1.3.0 for ~arm64-macos dev-python/jsonpointer: keyword 2.4 for ~arm64-macos sci-libs/hdf5: keyword 1.14.1 for ~arm64-macos Reported-by: Jiajie Chen <jiegec@qq.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
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Benda Xu · gentoo
sci-libs/hdf5: keyword 1.14.1 for ~x64-macos
Signed-off-by: Benda Xu <heroxbd@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: drop 1.14.0-r1
Bug: https://bugs.gentoo.org/908156 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.1 ppc, #908156
Signed-off-by: Sam James <sam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 amd64, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 ppc64, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 sparc, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.1 arm, #908156
Signed-off-by: Sam James <sam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 arm64, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: add 1.14.1
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: fix install w/ USE=mpi
The 'perf' tool was dropped w/ https://github.com/HDFGroup/hdf5/commit/8c6a3ce1d7006a633a8973f6ca827c664d7a1ac9. Closes: https://bugs.gentoo.org/904516 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: fix installed CMake files (exclude temporary include dir for build)
Closes: https://bugs.gentoo.org/904515 Closes: https://bugs.gentoo.org/904691 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: add 1.14.0
Closes: https://bugs.gentoo.org/863089 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: fix configure w/ clang 16
Signed-off-by: Sam James <sam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 arm, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 ppc, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 amd64, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 sparc, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 ppc64, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 x86, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 arm64, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Andreas Sturmlechner · gentoo
sci-libs/hdf5: drop versions
Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
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WANG Xuerui · gentoo
sci-libs/hdf5: keyword 1.12.2-r5 for ~loong
Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
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Benda Xu · gentoo
sci-libs/hdf5: reapply 1.12.2-r2 fix to autotools based ebuild.
Commit 8e16e7412dd38185db203d70732a06fd81b5fe95 introduced standard hdf5 plugins directory for Gentoo. This commit reapplies it after switching back from cmake to autotools. Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/hdf5: x86 stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: arm64 stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: arm stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r4 amd64, #862399
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: forward ~hppa ~s390
Signed-off-by: Sam James <sam@gentoo.org>
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Alessandro Barbieri · gentoo
sci-libs/hdf5: add missing ? to REQUIRED_USE
Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26233 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
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Alessandro Barbieri · gentoo
sci-libs/hdf5: readd unsupported useflag
Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26125 Signed-off-by: Sam James <sam@gentoo.org>
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Matthias Maier · gentoo
sci-libs/hdf5: attempt to delete perf binary only when USE=mpi
Closes: https://bugs.gentoo.org/854183 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
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Matthias Maier · gentoo
sci-libs/hdf5: remove "perf" executable
Closes: https://bugs.gentoo.org/854180 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: update EAPI 7 -> 8; drop back to autotools
Bug: https://github.com/HDFGroup/hdf5/issues/1814 Closes: https://bugs.gentoo.org/665378 Signed-off-by: Sam James <sam@gentoo.org>
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Jakov Smolić · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r2 x86, #851471
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="sparc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: arm64 stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="arm64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: arm stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="arm" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: amd64 stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: forward ~s390
Signed-off-by: Sam James <sam@gentoo.org>
Berrysoft · gentoo
sci-libs/hdf5: Set H5_DEFAULT_PLUGINDIR.
HDF5 sets is default plugin dir to /usr/local/hdf5/lib/plugin. It is reasonable in most cases, but not very well for Gentoo. In Gentoo, the lib directory is not always `lib`, and the prefix is not always `/`. Therefore, it is more reasonable to set the default dir under ${EPREFIX}, and change `lib` to the right lib dir name. Signed-off-by: Yuyi Wang <Strawberry_Str@hotmail.com> Closes: https://github.com/gentoo/gentoo/pull/25814 Signed-off-by: Sam James <sam@gentoo.org>
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Roman Beranek · gentoo
sci-libs/hdf5: fix cmake include dir regression
An attempt to build hdf5-1.12.2-r1 with USE='fortran' on a system where an older version of the package has already been installed will fail due to system headers taking precedence over the ones present in the source directory. This exact issue (#808633) has already been fixed in 225b7ee for 1.12.1, though the workaround somehow hadn't made it into the new ebuild. This commit brings it in. Bug: HDFGroup/hdf5#1027 Closes: https://bugs.gentoo.org/808633 Signed-off-by: Roman Beranek <roman.beranek@prusa3d.com> Closes: https://github.com/gentoo/gentoo/pull/25712 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: drop static libs in 1.12.2
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/hdf5: add 1.12.2
Lots of correctness and sanitizer fixes in .2 so possibly helps with the sparc bug (although we've applied a workaround now anyway). Bug: https://bugs.gentoo.org/686620 Signed-off-by: Sam James <sam@gentoo.org>
matoro · gentoo
sci-libs/hdf5: Stabilize 1.10.5-r1 sparc, #733578
Closes: https://bugs.gentoo.org/686620 Signed-off-by: matoro <matoro@users.noreply.github.com> Closes: https://github.com/gentoo/gentoo/pull/25291 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Keyword 1.12.1-r1 s390, #840912
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: workaround build failure with older hdf5 installed
Thanks to upstream for the helpful suggestion! Bug: https://github.com/HDFGroup/hdf5/issues/1027 Closes: https://bugs.gentoo.org/808633 Signed-off-by: Sam James <sam@gentoo.org>
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Horea Christian · gentoo
sci-libs/hdf5: ROS3 support
Package-Manager: Portage-3.0.23, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/22455 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Marek Szuba · gentoo
sci-libs/hdf5: add 1.12.1
Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Rolf Eike Beer · gentoo
sci-libs/hdf5: keyworded 1.10.5-r1 for hppa, bug #804115
Package-Manager: Portage-3.0.20, Repoman-3.0.3 RepoMan-Options: --include-arches="hppa" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sam James <sam@gentoo.org>
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Alex Fan · gentoo
sci-libs/hdf5: rekeyword 1.10.5{,-r1} for ~riscv
Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Alex Fan <alexfanqi@yahoo.com> Signed-off-by: Yixun Lan <dlan@gentoo.org>
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Marek Szuba · gentoo
sci-libs/hdf5: keyword ~1.10.5 for -riscv
Independently observed to fail tests by two arch testers. Bugzilla ticket to follow. Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: eutils--
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/hdf5: eutils--
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: fix build with slibtool
It's not completely clear how slibtool should've known to append -fPIC, but let's not worry too much for now. Closes: https://bugs.gentoo.org/775305 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: Stabilize 1.10.5-r1 arm, #709830
Signed-off-by: Sam James <sam@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/hdf5: x86 stable wrt bug #733578
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Sergei Trofimovich · gentoo
sci-libs/hdf5: stable 1.10.5-r1 for ppc64
stable wrt bug #733578 Package-Manager: Portage-3.0.1, Repoman-2.3.23 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
Sergei Trofimovich · gentoo
sci-libs/hdf5: stable 1.10.5-r1 for ppc
stable wrt bug #733578 Package-Manager: Portage-3.0.1, Repoman-2.3.23 RepoMan-Options: --include-arches="ppc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
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Sam James · gentoo
sci-libs/hdf5: arm64 stable (bug #733578)
Package-Manager: Portage-3.0.0, Repoman-2.3.23 Signed-off-by: Sam James <sam@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/hdf5: amd64 stable wrt bug #733578
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Alexey Sokolov · gentoo
sci-libs/hdf5: update homepage
Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alexey Sokolov <alexey+gentoo@asokolov.org> Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
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Matt Turner · gentoo
*/*: Drop stable ia64 keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org>
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Alessandro Barbieri · gentoo
sci-libs/hdf5: add unsupported useflag
this will allow unsupported combinations of useflags such as MPI + CXX. link mpi when using mpi. Closes: https://bugs.gentoo.org/710986 Closes: https://github.com/gentoo/gentoo/pull/14821 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
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Michał Górny · gentoo
*/*: Bump copyright on files touched this year
Update the copyright notice on all files that were touched since January 1st but did not have the notice updated. Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Matt Turner · gentoo
*/*: Drop stable alpha keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org>
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Michał Górny · gentoo
sci-libs: Remove *-fbsd KEYWORDS
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Alessandro Barbieri · gentoo
sci-libs/hdf5: disable static libraries
Closes: https://bugs.gentoo.org/694128 Closes: https://github.com/gentoo/gentoo/pull/13061 Package-Manager: Portage-2.3.76, Repoman-2.3.17 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org>
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Andreas Sturmlechner · gentoo
sci-libs/hdf5: Drop 1.8.18 and 1.10.1
Package-Manager: Portage-2.3.67, Repoman-2.3.14 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #678264
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="sparc"
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Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #678264
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="ppc"
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Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #678264
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="ppc64"
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Tobias Klausmann · gentoo
sci-libs/hdf5-1.10.5-r0: alpha stable
Bug: http://bugs.gentoo.org/678264 Signed-off-by: Tobias Klausmann <klausman@gentoo.org>
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Sergei Trofimovich · gentoo
sci-libs/hdf5: stable 1.10.5 for ia64, bug #678264
Package-Manager: Portage-2.3.66, Repoman-2.3.12 RepoMan-Options: --include-arches="ia64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>
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Mikle Kolyada · gentoo
sci-libs/hdf5: amd64 stable wrt bug #678264
Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> Package-Manager: Portage-2.3.62, Repoman-2.3.11 RepoMan-Options: --include-arches="amd64"
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Thomas Deutschmann · gentoo
sci-libs/hdf5: x86 stable (bug #678264)
Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Thomas Deutschmann <whissi@gentoo.org>
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Aaron Bauman · gentoo
sci-libs/hdf5: arm64 stable
Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.12 RepoMan-Options: --include-arches="arm64"
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Benda Xu · gentoo
sci-libs/hdf5: bump to 1.10.5 and EAPI 7.
Suggested-By: Fabio Rossi, Bernd Bug: https://bugs.gentoo.org/661158 Closes: https://bugs.gentoo.org/674998 Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
Benda Xu · gentoo
sci-libs/hdf5: Add back hl configuration options.
Closes: https://bugs.gentoo.org/640220 Package-Manager: Portage-2.3.16, Repoman-2.3.6
Benda Xu · gentoo
sci-libs/hdf5: Add back hl USE flag and conditions.
Suggested-by: Nikolaj Šujskij <skrattaren@yandex.ru> Closes: https://bugs.gentoo.org/640220 Package-Manager: Portage-2.3.16, Repoman-2.3.6
Benda Xu · gentoo
sci-libs/hdf5: drop implicits.patch.
The patch is not needed any more and causes compilation error. Reported-by: Eugene Shalygin <eugene.shalygin@gmail.com> Suggested-by: milan hodoscek <milan@cmm.ki.si> Closes: https://bugs.gentoo.org/639784 Package-Manager: Portage-2.3.16, Repoman-2.3.6
Benda Xu · gentoo
sci-libs/hdf5: really drop USE fortran2003.
fortran2003 is supported by gfortran-4.9 which is the oldest in the main tree. As of 1.10, hdf5 drops the fortran2003 configuration option. Package-Manager: Portage-2.3.16, Repoman-2.3.6
Benda Xu · gentoo
sci-libs/hdf5: version bump.
Drop fortran2003 use flag, replace rpath hacks with hprefixify. Reported-by: Erik Quaeghebeur <gentoobugzilla@equaeghe.nospammail.net> Closes: https://bugs.gentoo.org/600656 Package-Manager: Portage-2.3.16, Repoman-2.3.6
Alexis Ballier · gentoo
sci-libs/hdf5: keyword ~arm64
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Justin Lecher · gentoo
sci-libs/hdf5: Drop vulnerable versions for CVE-2016-4330
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=604386 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: ia64 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ia64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="sparc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: x86 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/hdf5: amd64 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Tobias Klausmann · gentoo
sci-libs/hdf5-1.8.18-r0: stable on alpha
Gentoo-Bug: 601404
Kacper Kowalik · gentoo
sci-libs/hdf5: version bump
Fixes security bugs: #601404, #601408, #601414, #601420 Package-Manager: portage-2.3.2
Alexis Ballier · gentoo
sci-libs/hdf5: Allow cxx & mpi at the same time.
This allows to install sci-lib/flann-1.9.1[mpi] for example. See: http://hdf-forum.184993.n3.nabble.com/hdf-forum-HDF5-enable-cxx-enable-threadsafe-conflict-ubuntu-debian-packages-td194242.html Package-Manager: portage-2.3.1
Kacper Kowalik · gentoo
sci-libs/hdf5: add use flag for enabling high level API
Fixes bug #594560 reported by eroen <gentoo@eroen.eu> Package-Manager: portage-2.2.28
Kacper Kowalik · gentoo
sci-libs/hdf5: update SRC_URI, fixes #594454
Package-Manager: portage-2.2.28
Kacper Kowalik · gentoo
sci-libs/hdf5: version bump
Package-Manager: portage-2.2.28
Sébastien Fabbro · gentoo
sci-libs/hdf5: switched to virtual/szip
Package-Manager: portage-2.2.27
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed