Summary
HDF5 is a file format and library for storing scientific data. HDF5 was designed and implemented to address the deficiencies of HDF4.x. It has a more powerful and flexible data model, supports files larger than 2 GB, and supports parallel I/O.
Versions
v1.14.2 :: 0/1.14.2 :: gentoo
- Modified
- License
- NCSA-HDF
- Keywords
- ~alpha ~amd64 ~amd64-linux ~arm ~arm64 ~arm64-macos ~hppa ~ia64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x64-macos ~x86 ~x86-linux
- USE flags
- cxx debug examples fortran hl mpi szip test threads unsupported zlib
v1.14.1 :: 0/1.14.1 :: gentoo
- Modified
- License
- NCSA-HDF
- Keywords
- amd64 arm arm64 ppc ppc64 sparc ~alpha ~amd64-linux ~arm64-macos ~hppa ~ia64 ~loong ~riscv ~s390 ~x64-macos ~x86 ~x86-linux
- USE flags
- cxx debug examples fortran hl mpi szip test threads unsupported zlib
v1.12.2-r6 :: 0/1.12.2 :: gentoo
- Modified
- License
- NCSA-HDF
- Keywords
- amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~hppa ~ia64 ~loong ~riscv ~s390 ~x86-linux
- USE flags
- cxx debug examples fortran hl mpi szip threads unsupported zlib
v1.12.2-r4 :: 0/1.12.2 :: gentoo
- Modified
- License
- NCSA-HDF
- Keywords
- amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~hppa ~ia64 ~riscv ~s390 ~x86-linux
- USE flags
- cxx debug examples fortran hl mpi szip threads unsupported zlib
v1.10.5-r1 :: 0/1.10.5 :: gentoo
- Modified
- License
- NCSA-HDF
- Keywords
- amd64 arm arm64 ppc ppc64 sparc x86 ~alpha ~amd64-linux ~hppa ~ia64 ~riscv ~x86-linux
- USE flags
- cxx debug examples fortran hl mpi szip threads unsupported zlib
USE flags
General
- cxx
- Build support for C++ (bindings, extra libraries, code generation, ...)
- debug
- Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
- examples
- Install examples, usually source code
- fortran
- Add support for fortran
- hl
- Enable high level API (https://support.hdfgroup.org/HDF5/doc/HL/index.html)
- mpi
- Add MPI (Message Passing Interface) layer to the apps that support it
- szip
- Use the szip compression library
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
- threads
- Add threads support for various packages. Usually pthreads
- unsupported
- Enable unsupported combinations of configuration options
- zlib
- Add support for zlib (de)compression
Dependencies
sys-devel / autoconf : Used to create autoconfiguration files
sys-devel / libtool : A shared library tool for developers
sys-libs / zlib : Standard (de)compression library
virtual / fortran : Virtual for Fortran Compiler
virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation
virtual / szip : Virtual for szip compression drop-in replacements
Runtime Dependencies
sys-libs / zlib : Standard (de)compression library
virtual / fortran : Virtual for Fortran Compiler
virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation
virtual / szip : Virtual for szip compression drop-in replacements
Depending packages
dev-lang / gdl : GNU Data Language
dev-libs / starpu : Unified runtime system for heterogeneous multicore architectures
dev-python / h5py : Simple Python interface to HDF5 files
dev-python / netcdf4 : Python/numpy interface to the netCDF C library
dev-python / pytables : Hierarchical datasets for Python
dev-util / diffoscope : Will try to get to the bottom of what makes files or directories different
media-gfx / alembic : Open framework for storing and sharing scene data
media-gfx / freecad : QT based Computer Aided Design application
media-libs / Field3D : A library for storing voxel data
media-libs / opencv : A collection of algorithms and sample code for various computer vision problems
media-libs / vigra : C++ computer vision library emphasizing customizable algorithms and structures
sci-biology / kallisto : Near-optimal RNA-Seq quantification
sci-chemistry / avogadro2 : Advanced molecule editor and visualizer 2
sci-chemistry / votca : Versatile Object-oriented Toolkit for Coarse-graining Applications
sci-electronics / gazebo : A 3D multiple robot simulator with dynamics
sci-geosciences / qgis : User friendly Geographic Information System
sci-libs / avogadrolibs : Advanced molecule editor and visualizer 2 - libraries
sci-libs / cgnslib : CFD General Notation System standard library
sci-libs / dealii : Solving partial differential equations with the finite element method
sci-libs / flann : Fast approximate nearest neighbor searches in high dimensional spaces
sci-libs / flann : Fast approximate nearest neighbor searches in high dimensional spaces
sci-libs / gdal : Translator library for raster geospatial data formats (includes OGR support)
sci-libs / gmsh : Three-dimensional finite element mesh generator
sci-libs / h5hut : High-Performance I/O Library for Particle-based Simulations
sci-libs / h5part : Portable High Performance Parallel Data Interface to HDF5
sci-libs / mathgl : Math Graphics Library
sci-libs / matio : Library for reading and writing matlab files
sci-libs / med : A library to store and exchange meshed data or computation results
sci-libs / netcdf : Scientific library and interface for array oriented data access
sci-libs / o2scl : Object-oriented Scientific Computing Library
sci-libs / silo : A mesh and field I/O library and scientific database
sci-libs / trilinos : Scientific library collection for large scale problems
sci-libs / vtk : The Visualization Toolkit
sci-libs / xdmf2 : eXtensible Data Model and Format
sci-mathematics / octave : High-level interactive language for numerical computations
sci-mathematics / petsc : Portable, Extensible Toolkit for Scientific Computation
sci-misc / h5utils : Utilities for visualization and conversion of HDF5 files
sci-physics / espresso : Extensible Simulation Package for Research on Soft matter
sci-physics / geant : Toolkit for simulation of passage of particles through matter
sci-physics / lammps : Large-scale Atomic/Molecular Massively Parallel Simulator
sci-visualization / gwyddion : Framework for Scanning Mode Microscopy data analysis
sci-visualization / labplot : Scientific data analysis and visualisation based on KDE Frameworks
sci-visualization / paraview : Powerful scientific data visualization application
sys-cluster / slurm : A Highly Scalable Resource Manager
Bugs
- 560964
- sci-libs/hdf5 - hdf5-1.8.9-mpicxx.patch causes macro redefinition warnings with clang-3.7
- 661158
- sci-libs/hdf5: Multiple vulnerabilities
- 675606
- sci-libs/hdf5-1.8.21 - pkg-config files are not generated
- 682794
- sci-libs/hdf5-1.10.5 USE="fortran mpi" - FATAL ERROR: Cannot read module file 'mpi.mod' opened at (1), because it was created by a different version of GNU Fortran
- 714024
- sci-libs/hdf5: multiple vulnerabilities
- 716672
- sci-libs/hdf5-1.10.5-r1 fails 8 tests on ppc
- 741438
- sci-libs/hdf5-1.10.5-r1 fails tests
- 808731
- media-libs/vigra[hdf5] with >=sci-libs/hdf5-1.12: hdf5impex.cxx: too few arguments to function H5Oget_info_by_name3
- 808733
- [TRACKER] sci-libs/hdf5-1.12 support
- 817770
- sci-libs/hdf5-1.12.1-r1 does not respect CFLAGS
- 862723
- sci-libs/hdf5-1.12.2-r4 fails to compile (lto): tf.F90:169:33: error: type of h5_fixname_c does not match original declaration [-Werror=lto-type-mismatch]
- 862759
- sci-libs/hdf5-1.10.5-r1 installs pre-stripped files
- 866091
- sci-libs/hdf5: multiple vulnerabilities
- 898282
- sci-libs/hdf5-1.10.5-r1 fails to compile (MUSL-CLANG-SYSTEM): H5Odeprec.c:141:8: error: call to undeclared function H5CX_set_apl; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
- 905136
- sci-libs/hdf5: heap buffer overread
- 913638
- sci-libs/hdf5-1.14.2 - [slibtool] /.../ld: .libs/H5_ff.o: relocation R_X86_64_PC32 against symbol _h5fortran_types_MOD_fortran_integer_avail_
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: add 1.14.2
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Benda Xu · gentoo
dev-python/h5py: keyword it and its dependencies for ~arm64-macos.
dev-python/six: keyword 1.16.0-r1 for ~arm64-macos dev-python/regex: keyword 2023.6.3 for ~arm64-macos dev-python/python-dateutil: keyword 2.8.2-r1 for ~arm64-macos dev-python/idna: keyword 3.4 for ~arm64-macos dev-python/attrs: keyword 23.1.0 for ~arm64-macos dev-python/numpy: keyword 1.24.4-r1 for ~arm64-macos dev-python/jsonschema: keyword 4.17.3 for ~arm64-macos dev-python/arrow: keyword 1.2.3 for ~arm64-macos dev-python/fqdn: keyword 1.5.1-r2 for ~arm64-macos dev-python/hatch-fancy-pypi-readme: keyword 23.1.0 for ~arm64-macos dev-python/hatch-vcs: keyword 0.3.0 for ~arm64-macos dev-python/isoduration: keyword 20.11.0-r1 for ~arm64-macos dev-python/lark: keyword 1.1.5 for ~arm64-macos dev-python/pkgconfig: keyword 1.5.5-r1 for ~arm64-macos dev-python/poetry-core: keyword 1.6.1 for ~arm64-macos dev-python/pyrsistent: keyword 0.19.3 for ~arm64-macos dev-python/rfc3339-validator: keyword 0.1.4-r1 for ~arm64-macos dev-python/rfc3986-validator: keyword 0.1.1-r1 for ~arm64-macos dev-python/rfc3987: keyword 1.3.8-r2 for ~arm64-macos dev-python/strict-rfc3339: keyword 0.7-r2 for ~arm64-macos dev-python/webcolors: keyword 1.13 for ~arm64-macos dev-python/uri_template: keyword 1.3.0 for ~arm64-macos dev-python/jsonpointer: keyword 2.4 for ~arm64-macos sci-libs/hdf5: keyword 1.14.1 for ~arm64-macos Reported-by: Jiajie Chen <jiegec@qq.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Benda Xu · gentoo
sci-libs/hdf5: keyword 1.14.1 for ~x64-macos
Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: drop 1.14.0-r1
Bug: https://bugs.gentoo.org/908156 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.1 ppc, #908156
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 amd64, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 ppc64, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 sparc, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: Stabilize 1.14.1 arm, #908156
Signed-off-by: Sam James <sam@gentoo.org> - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.14.1 arm64, #908156
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: add 1.14.1
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: fix install w/ USE=mpi
The 'perf' tool was dropped w/ https://github.com/HDFGroup/hdf5/commit/8c6a3ce1d7006a633a8973f6ca827c664d7a1ac9. Closes: https://bugs.gentoo.org/904516 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: fix installed CMake files (exclude temporary include dir for build)
Closes: https://bugs.gentoo.org/904515 Closes: https://bugs.gentoo.org/904691 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: add 1.14.0
Closes: https://bugs.gentoo.org/863089 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: fix configure w/ clang 16
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 arm, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 ppc, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 amd64, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 sparc, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 ppc64, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 x86, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r5 arm64, #899460
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas Sturmlechner · gentoo
sci-libs/hdf5: drop versions
Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - WANG Xuerui · gentoo
sci-libs/hdf5: keyword 1.12.2-r5 for ~loong
Signed-off-by: WANG Xuerui <xen0n@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Benda Xu · gentoo
sci-libs/hdf5: reapply 1.12.2-r2 fix to autotools based ebuild.
Commit 8e16e7412dd38185db203d70732a06fd81b5fe95 introduced standard hdf5 plugins directory for Gentoo. This commit reapplies it after switching back from cmake to autotools. Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/hdf5: x86 stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: arm64 stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: arm stable wrt bug #862399
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r4 amd64, #862399
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: forward ~hppa ~s390
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alessandro Barbieri · gentoo
sci-libs/hdf5: add missing ? to REQUIRED_USE
Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26233 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alessandro Barbieri · gentoo
sci-libs/hdf5: readd unsupported useflag
Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26125 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matthias Maier · gentoo
sci-libs/hdf5: attempt to delete perf binary only when USE=mpi
Closes: https://bugs.gentoo.org/854183 Signed-off-by: Matthias Maier <tamiko@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matthias Maier · gentoo
sci-libs/hdf5: remove "perf" executable
Closes: https://bugs.gentoo.org/854180 Signed-off-by: Matthias Maier <tamiko@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: update EAPI 7 -> 8; drop back to autotools
Bug: https://github.com/HDFGroup/hdf5/issues/1814 Closes: https://bugs.gentoo.org/665378 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
sci-libs/hdf5: Stabilize 1.12.2-r2 x86, #851471
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="sparc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: arm64 stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="arm64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: arm stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="arm" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: amd64 stable wrt bug #851471
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: forward ~s390
Signed-off-by: Sam James <sam@gentoo.org> - Berrysoft · gentoo
sci-libs/hdf5: Set H5_DEFAULT_PLUGINDIR.
HDF5 sets is default plugin dir to /usr/local/hdf5/lib/plugin. It is reasonable in most cases, but not very well for Gentoo. In Gentoo, the lib directory is not always `lib`, and the prefix is not always `/`. Therefore, it is more reasonable to set the default dir under ${EPREFIX}, and change `lib` to the right lib dir name. Signed-off-by: Yuyi Wang <Strawberry_Str@hotmail.com> Closes: https://github.com/gentoo/gentoo/pull/25814 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Roman Beranek · gentoo
sci-libs/hdf5: fix cmake include dir regression
An attempt to build hdf5-1.12.2-r1 with USE='fortran' on a system where an older version of the package has already been installed will fail due to system headers taking precedence over the ones present in the source directory. This exact issue (#808633) has already been fixed in 225b7ee for 1.12.1, though the workaround somehow hadn't made it into the new ebuild. This commit brings it in. Bug: HDFGroup/hdf5#1027 Closes: https://bugs.gentoo.org/808633 Signed-off-by: Roman Beranek <roman.beranek@prusa3d.com> Closes: https://github.com/gentoo/gentoo/pull/25712 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: drop static libs in 1.12.2
Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
sci-libs/hdf5: add 1.12.2
Lots of correctness and sanitizer fixes in .2 so possibly helps with the sparc bug (although we've applied a workaround now anyway). Bug: https://bugs.gentoo.org/686620 Signed-off-by: Sam James <sam@gentoo.org> - matoro · gentoo
sci-libs/hdf5: Stabilize 1.10.5-r1 sparc, #733578
Closes: https://bugs.gentoo.org/686620 Signed-off-by: matoro <matoro@users.noreply.github.com> Closes: https://github.com/gentoo/gentoo/pull/25291 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: Keyword 1.12.1-r1 s390, #840912
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: workaround build failure with older hdf5 installed
Thanks to upstream for the helpful suggestion! Bug: https://github.com/HDFGroup/hdf5/issues/1027 Closes: https://bugs.gentoo.org/808633 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Horea Christian · gentoo
sci-libs/hdf5: ROS3 support
Package-Manager: Portage-3.0.23, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu> Closes: https://github.com/gentoo/gentoo/pull/22455 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Marek Szuba · gentoo
sci-libs/hdf5: add 1.12.1
Signed-off-by: Marek Szuba <marecki@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Rolf Eike Beer · gentoo
sci-libs/hdf5: keyworded 1.10.5-r1 for hppa, bug #804115
Package-Manager: Portage-3.0.20, Repoman-3.0.3 RepoMan-Options: --include-arches="hppa" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alex Fan · gentoo
sci-libs/hdf5: rekeyword 1.10.5{,-r1} for ~riscv
Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Alex Fan <alexfanqi@yahoo.com> Signed-off-by: Yixun Lan <dlan@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Marek Szuba · gentoo
sci-libs/hdf5: keyword ~1.10.5 for -riscv
Independently observed to fail tests by two arch testers. Bugzilla ticket to follow. Signed-off-by: Marek Szuba <marecki@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: eutils--
Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
sci-libs/hdf5: eutils--
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: fix build with slibtool
It's not completely clear how slibtool should've known to append -fPIC, but let's not worry too much for now. Closes: https://bugs.gentoo.org/775305 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: Stabilize 1.10.5-r1 arm, #709830
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/hdf5: x86 stable wrt bug #733578
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Sergei Trofimovich · gentoo
sci-libs/hdf5: stable 1.10.5-r1 for ppc64
stable wrt bug #733578 Package-Manager: Portage-3.0.1, Repoman-2.3.23 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> - Sergei Trofimovich · gentoo
sci-libs/hdf5: stable 1.10.5-r1 for ppc
stable wrt bug #733578 Package-Manager: Portage-3.0.1, Repoman-2.3.23 RepoMan-Options: --include-arches="ppc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/hdf5: arm64 stable (bug #733578)
Package-Manager: Portage-3.0.0, Repoman-2.3.23 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/hdf5: amd64 stable wrt bug #733578
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alexey Sokolov · gentoo
sci-libs/hdf5: update homepage
Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Alexey Sokolov <alexey+gentoo@asokolov.org> Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
*/*: Drop stable ia64 keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alessandro Barbieri · gentoo
sci-libs/hdf5: add unsupported useflag
this will allow unsupported combinations of useflags such as MPI + CXX. link mpi when using mpi. Closes: https://bugs.gentoo.org/710986 Closes: https://github.com/gentoo/gentoo/pull/14821 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Bump copyright on files touched this year
Update the copyright notice on all files that were touched since January 1st but did not have the notice updated. Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
*/*: Drop stable alpha keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-libs: Remove *-fbsd KEYWORDS
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Alessandro Barbieri · gentoo
sci-libs/hdf5: disable static libraries
Closes: https://bugs.gentoo.org/694128 Closes: https://github.com/gentoo/gentoo/pull/13061 Package-Manager: Portage-2.3.76, Repoman-2.3.17 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas Sturmlechner · gentoo
sci-libs/hdf5: Drop 1.8.18 and 1.10.1
Package-Manager: Portage-2.3.67, Repoman-2.3.14 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #678264
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="sparc" - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #678264
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="ppc" - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #678264
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11 RepoMan-Options: --include-arches="ppc64" - Repository mirror & CI · gentoo
Merge updates from master - Tobias Klausmann · gentoo
sci-libs/hdf5-1.10.5-r0: alpha stable
Bug: http://bugs.gentoo.org/678264 Signed-off-by: Tobias Klausmann <klausman@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sergei Trofimovich · gentoo
sci-libs/hdf5: stable 1.10.5 for ia64, bug #678264
Package-Manager: Portage-2.3.66, Repoman-2.3.12 RepoMan-Options: --include-arches="ia64" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mikle Kolyada · gentoo
sci-libs/hdf5: amd64 stable wrt bug #678264
Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> Package-Manager: Portage-2.3.62, Repoman-2.3.11 RepoMan-Options: --include-arches="amd64" - Repository mirror & CI · gentoo
Merge updates from master - Thomas Deutschmann · gentoo
sci-libs/hdf5: x86 stable (bug #678264)
Package-Manager: Portage-2.3.66, Repoman-2.3.12 Signed-off-by: Thomas Deutschmann <whissi@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Aaron Bauman · gentoo
sci-libs/hdf5: arm64 stable
Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.12 RepoMan-Options: --include-arches="arm64" - Repository mirror & CI · gentoo
Merge updates from master - Benda Xu · gentoo
sci-libs/hdf5: bump to 1.10.5 and EAPI 7.
Suggested-By: Fabio Rossi, Bernd Bug: https://bugs.gentoo.org/661158 Closes: https://bugs.gentoo.org/674998 Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Benda Xu · gentoo
sci-libs/hdf5: Add back hl configuration options.
Closes: https://bugs.gentoo.org/640220 Package-Manager: Portage-2.3.16, Repoman-2.3.6 - Benda Xu · gentoo
sci-libs/hdf5: Add back hl USE flag and conditions.
Suggested-by: Nikolaj Šujskij <skrattaren@yandex.ru> Closes: https://bugs.gentoo.org/640220 Package-Manager: Portage-2.3.16, Repoman-2.3.6 - Benda Xu · gentoo
sci-libs/hdf5: drop implicits.patch.
The patch is not needed any more and causes compilation error. Reported-by: Eugene Shalygin <eugene.shalygin@gmail.com> Suggested-by: milan hodoscek <milan@cmm.ki.si> Closes: https://bugs.gentoo.org/639784 Package-Manager: Portage-2.3.16, Repoman-2.3.6 - Benda Xu · gentoo
sci-libs/hdf5: really drop USE fortran2003.
fortran2003 is supported by gfortran-4.9 which is the oldest in the main tree. As of 1.10, hdf5 drops the fortran2003 configuration option. Package-Manager: Portage-2.3.16, Repoman-2.3.6 - Benda Xu · gentoo
sci-libs/hdf5: version bump.
Drop fortran2003 use flag, replace rpath hacks with hprefixify. Reported-by: Erik Quaeghebeur <gentoobugzilla@equaeghe.nospammail.net> Closes: https://bugs.gentoo.org/600656 Package-Manager: Portage-2.3.16, Repoman-2.3.6 - Alexis Ballier · gentoo
sci-libs/hdf5: keyword ~arm64
Package-Manager: Portage-2.3.6, Repoman-2.3.2 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - T. Malfatti · gentoo
media-libs/portaudio: Version bump - Justin Lecher · gentoo
sci-libs/hdf5: Drop vulnerable versions for CVE-2016-4330
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=604386 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc64 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: ppc stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: ia64 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ia64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: sparc stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="sparc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: x86 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/hdf5: amd64 stable wrt bug #601404
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Tobias Klausmann · gentoo
sci-libs/hdf5-1.8.18-r0: stable on alpha
Gentoo-Bug: 601404 - Kacper Kowalik · gentoo
sci-libs/hdf5: version bump
Fixes security bugs: #601404, #601408, #601414, #601420 Package-Manager: portage-2.3.2 - Alexis Ballier · gentoo
sci-libs/hdf5: Allow cxx & mpi at the same time.
This allows to install sci-lib/flann-1.9.1[mpi] for example. See: http://hdf-forum.184993.n3.nabble.com/hdf-forum-HDF5-enable-cxx-enable-threadsafe-conflict-ubuntu-debian-packages-td194242.html Package-Manager: portage-2.3.1 - Kacper Kowalik · gentoo
sci-libs/hdf5: add use flag for enabling high level API
Fixes bug #594560 reported by eroen <gentoo@eroen.eu> Package-Manager: portage-2.2.28 - Kacper Kowalik · gentoo
sci-libs/hdf5: update SRC_URI, fixes #594454
Package-Manager: portage-2.2.28 - Kacper Kowalik · gentoo
sci-libs/hdf5: version bump
Package-Manager: portage-2.2.28 - Sébastien Fabbro · gentoo
sci-libs/hdf5: switched to virtual/szip
Package-Manager: portage-2.2.27 - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed