{"bugs":[{"bugid":645674,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"sci-libs\/htslib - provide USE flags for curl and gcs s3 plugins"},{"bugid":927873,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-libs\/htslib-1.17 has implicit function declarations in configure logs"}],"categories":[{"categoryid":449,"name":"app-arch","summary":"The app-arch category contains tools for archiving, compressing and uncompressing files or groups of files."},{"categoryid":425,"name":"dev-perl","summary":"The dev-perl category contains libraries and utilities relevant to the Perl programming language."},{"categoryid":451,"name":"net-misc","summary":"The net-misc category contains various miscellaneous networking tools and utilities."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"475132eba5890f664da63578d19d64bccecc63af","committime":"2026-02-02T16:15:50","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"2d1b15c67e315e04b57f7c95ff102122f90d69e8","committime":"2026-02-02T16:03:47","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.23"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen <grobian@gentoo.org>","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":62539,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0d4b297c345fb6a401e341d0e1b69f4877bdaa2a","committime":"2025-11-29T13:45:45","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"e921b5b7276f852c76550e534a9b5ee240becf7b","committime":"2025-11-29T13:40:18","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: bring back 1.21 for pysam"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"3514aef2078c56b95ef5aa73a1e1fb97d832eb2e","committime":"2025-11-29T13:31:48","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.22.1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0665ef749aca9e946a85ab6198236f201ee99ceb","committime":"2025-11-29T13:30:45","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"f81eca8b1827d23684527f22180e3ab919b372af","committime":"2025-11-29T13:17:12","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: drop 1.19.1, 1.21"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"00b4cc6bb3b864fbeaa6dca1da399c3716afed16","committime":"2025-11-04T09:50:46","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Done via:\n\n```\ngit grep -l virtual\/zlib$ | xargs sed -i -e 's@virtual\/zlib$@&:=@'\n```\n\nSigned-off-by: Michał Górny <mgorny@gentoo.org>","commitid":"6a3644bf2f9aace46ad9bbab2e4f3bccd747079e","committime":"2025-11-04T09:36:27","packageid":62539,"repoid":1,"summary":"*\/*: Add := to virtual\/zlib deps, part 1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5a1adb610b1d91ab6683cbe671e266f424224c16","committime":"2025-11-04T08:35:48","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Update done using:\n\n```\ngit grep -l sys-libs\/zlib dev-* | xargs sed -i -e s@sys-libs\/zlib@virtual\/zlib@g\ngit diff --name-only | xargs copybump\ngit diff --name-only | xargs grep -l PYTHON_COMPAT | xargs gpy-impl -@dead\npkgcheck scan --commits -c SourcingCheck,VisibilityCheck --exit error\n```\n\nSigned-off-by: Michał Górny <mgorny@gentoo.org>","commitid":"f1351833569f8b22abc3dc9e74abeed7e8641096","committime":"2025-11-04T08:17:06","packageid":62539,"repoid":1,"summary":"sci-*\/*: update for virtual\/zlib"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5636995d406685527919d45bbe44c1f8a8c1fcdd","committime":"2025-06-22T15:52:13","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"2d54b4f1d6d33aed52a34833da2f0a24bceaf3ca","committime":"2025-06-22T15:33:09","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.22"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2787fcfad93d0bd14da9380e0f852c46cefde2b3","committime":"2025-04-14T16:05:14","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James <sam@gentoo.org>","commitid":"e0234236c17eea41c254e48d4bc041e2f4b26a5c","committime":"2025-04-14T15:57:57","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Stabilize 1.20 amd64, #920140"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"45a8c91b24abd9c783b90a37eb4acca7613a0c93","committime":"2025-03-21T15:05:11","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"quincyf467@protonmail.com","authorname":"Quincy Fleming","body":"Signed-off-by: Quincy Fleming <quincyf467@protonmail.com>\nSigned-off-by: Nowa Ammerlaan <nowa@gentoo.org>","commitid":"5113338dacf2fcb02b01c183599eff525bde508e","committime":"2025-03-14T23:24:17","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.21"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"02e5e751049cd4311fd9db8c4d4647800e60b609","committime":"2024-05-24T09:03:45","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"dda90e924ca655b36afed52816962a71629b824d","committime":"2024-05-24T08:59:49","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.20"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"5fd841ad6feba9a48cdbff77d1d9dcfed228a9e1","committime":"2024-05-24T08:59:48","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: drop 1.17"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c712b4a4f5e2d22b9b99cd7be1333e5bf279ce88","committime":"2024-03-26T11:18:41","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"ca013469c4692182f51264a980af7b5688d34d15","committime":"2024-03-26T11:06:20","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.19.1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"735d7f5411f2dac24191880c654556cc7e42271e","committime":"2023-04-06T19:31:44","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"29808b44599626d44da9202e86f99c5c6fc5edfd","committime":"2023-04-06T19:29:09","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: drop 1.16"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"131761f618321780511172e7b352f842d5c0b70e","committime":"2023-03-30T11:16:45","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"30fc69a81e71a3c6d6a72af3b9b24e5b742c2832","committime":"2023-03-30T11:10:58","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.17"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"89d8cba905e693594e0095b73d036c7f1d26527a","committime":"2023-02-19T15:46:53","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/github.com\/gentoo\/gentoo\/pull\/29661\nCloses: https:\/\/bugs.gentoo.org\/873310\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"d16051f7223082375cc255d34da4a12737092748","committime":"2023-02-19T15:44:21","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: drop 1.15.1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6e318a7ce0c6eb0732e59de3f8932a8ac7022910","committime":"2022-12-27T00:18:04","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"19c25897b24fd3699dc126bfb89af9d409ff0a71","committime":"2022-12-27T00:06:43","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.16"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e00f3bf79ece7f33a551fdf890b813179ead94d5","committime":"2022-06-19T08:18:46","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/github.com\/gentoo\/gentoo\/pull\/25964\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"b1d57c4d6a1a0838f716fadedb0160fc8e08dc55","committime":"2022-06-19T08:08:46","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: drop 1.13, 1.15"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"d9117a954f87f4019b937f63355580c84041e3b8","committime":"2022-06-10T12:47:52","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"4ffaed7e16ee38e8b8edbda16aa559cd21cc382c","committime":"2022-06-10T12:41:45","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.15.1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"889293f491da0405efbecdaea7bb623755193a64","committime":"2022-03-19T11:49:11","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert <soap@gentoo.org>","commitid":"88f4424986b92b35e86a44e5d0fc67d4cedef2aa","committime":"2022-03-19T11:38:03","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.15"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4e0f7fb7e8024d50131b72ba4c2d56a152ce2d3d","committime":"2021-10-11T15:06:24","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/799788\nSigned-off-by: David Seifert <soap@gentoo.org>\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/22556\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"fac85a0681906115f21e878305e44c0243e0c686","committime":"2021-10-11T14:55:11","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: drop 1.10.2"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"376defb3c9166b6757ccf97bf7439cfb268fe7de","committime":"2021-10-03T17:51:09","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/799788\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"a7e45d492762de669f6e84b5df12aaf95cae1a1d","committime":"2021-10-03T17:41:36","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: add 1.13"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"10c124cb3f443677afd31c5df9ebeca2905dc995","committime":"2020-12-10T14:12:56","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/725270\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/18592\nPackage-Manager: Portage-3.0.12, Repoman-3.0.2\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"448c220d0c712520c92dcfa6a3ce9aea31deb75c","committime":"2020-12-10T13:44:23","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Remove old 1.9"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3ddff3fd2ce17b27658777001c77412490fdbddf","committime":"2020-08-03T21:35:14","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/github.com\/gentoo\/gentoo\/pull\/16982\nPackage-Manager: Portage-3.0.1, Repoman-2.3.23\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"b63825b8f4636cdcdb7066279b4a743b19e530f8","committime":"2020-08-03T21:11:21","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Remove old"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"b503e6b8ce1cfc6365abe5c16cfb25872a1aad9d","committime":"2020-08-03T17:05:18","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/725270\nPackage-Manager: Portage-3.0.1, Repoman-2.3.23\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"5e82d24704dfce8efb91971c96031756d46fe0c2","committime":"2020-08-03T16:54:20","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Bump to version 1.10.2"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"52708ec8171a6a1b2b70ec765d1a56ea564236e4","committime":"2020-03-20T09:41:05","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1ec602baf940ddbfc4dc24dc882249dfd0239c77","committime":"2020-03-20T09:07:32","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: Portage-2.3.89, Repoman-2.3.20\nRepoMan-Options: --include-arches=\"x86\"\nSigned-off-by: Agostino Sarubbo <ago@gentoo.org>","commitid":"63df71b9c5b962de7ef92d4956f88bfdf8fe1e7d","committime":"2020-03-20T09:04:35","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: x86 stable wrt bug #713236"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: Portage-2.3.89, Repoman-2.3.20\nRepoMan-Options: --include-arches=\"amd64\"\nSigned-off-by: Agostino Sarubbo <ago@gentoo.org>","commitid":"8d367cf57a082dc88d24a5bf22aadb90c18709a3","committime":"2020-03-20T08:59:04","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: amd64 stable wrt bug #713236"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fde58f2c9211641a64be317bec48bbe36a815062","committime":"2018-10-28T20:44:04","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/647714\nSigned-off-by: David Seifert <soap@gentoo.org>\nPackage-Manager: Portage-2.3.50, Repoman-2.3.11","commitid":"85fad26e8efb7e2fc01de49e59a0d7e0b210c5bc","committime":"2018-10-28T20:24:33","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Version bump to 1.9"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"299bb59f5cb803e437aa028d8dd5b082e923ab4f","committime":"2017-09-02T12:45:26","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.8, Repoman-2.3.3\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/5593","commitid":"8414705ae146126e4745b343cd33e71a405cb166","committime":"2017-09-02T11:07:41","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Remove old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"c0fcc2371fff8b16cc864b96d3d5b4f16fea9071","committime":"2017-07-29T09:30:40","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.6, Repoman-2.3.3","commitid":"a4708f79ea39cabbf7231fdedecf6ee8a525a3e6","committime":"2017-07-29T09:17:59","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Bump to version 1.5"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":62539,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"7b02e65e23ddc1a82c41c96e91b4e08096fc067b","committime":"2016-07-30T08:42:07","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.3.0","commitid":"61be48515eb9adb8d4513e4ad52faec15586d984","committime":"2016-07-29T17:24:58","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"aa65003c3348610b9dbdc7eb2f810a57de45763e","committime":"2016-03-27T22:42:12","packageid":62539,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.2.28","commitid":"6d547d1a204d6ff97d90e74949b6f710ef106630","committime":"2016-03-27T21:00:23","packageid":62539,"repoid":1,"summary":"sci-libs\/htslib: Version bump to 1.3"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":62539,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson <robbat2@gentoo.org>\nX-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts\nX-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":62539,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":62539,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":449,"description":"A high-quality data compressor used extensively by Gentoo Linux","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"bzip2","packageid":47649},{"block":false,"categoryid":449,"description":"Utils for managing LZMA compressed files","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"xz-utils","packageid":53735},{"block":false,"categoryid":451,"description":"A Client that groks URLs","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"blueness@gentoo.org","maintainername":"Anthony G. Basile","name":"curl","packageid":54768},{"block":false,"categoryid":396,"description":"Virtual for libz.so providers","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2025-11-04T07:31:41.418357","name":"zlib","packageid":78605}],"depending":[{"block":false,"categoryid":353,"description":"Eukaryotic gene predictor","ebuildids":[777090,777090,853615,853615],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"augustus","packageid":54585},{"block":false,"categoryid":353,"description":"Utilities for analysing and manipulating the SAM\/BAM alignment formats","ebuildids":[827637,827637,868035,868035,883137,883137,883138,883138,888653,888653],"firstseen":"2010-12-22T14:41:05.491029","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"samtools","packageid":56631},{"block":false,"categoryid":353,"description":"Python interface for the SAM\/BAM sequence alignment and mapping format","ebuildids":[782457,782457,871937,871937],"firstseen":"2012-01-29T14:36:43.052897","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"pysam","packageid":58773},{"block":false,"categoryid":353,"description":"Utilities for variant calling and manipulating VCF and BCF files","ebuildids":[827635,827635,868034,868034,883136,883136,888652,888652],"firstseen":"2017-09-02T12:52:02.026880","name":"bcftools","packageid":67995},{"block":false,"categoryid":353,"description":"STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays","ebuildids":[740765,740765],"firstseen":"2017-11-16T13:46:45.075214","name":"STAR","packageid":68457},{"block":false,"categoryid":353,"description":"Near-optimal RNA-Seq quantification","ebuildids":[821731,821731],"firstseen":"2017-11-16T13:46:45.075214","name":"kallisto","packageid":68458},{"block":false,"categoryid":425,"description":"Perl bindings for sci-libs\/htslib","ebuildids":[827156,827156],"firstseen":"2018-04-26T12:37:48.334952","name":"Bio-DB-HTS","packageid":69100}],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":888654,"firstseen":"2026-02-02T16:21:18.484774","license":"MIT","moddate":"2026-03-22T20:20:57","packageid":62539,"repoid":1,"slot":"0\/3","uses":["bzip2","curl","lzma"],"version":"1.23"},{"archs":["~amd64","~x86"],"ebuildid":883140,"firstseen":"2025-11-29T13:56:37.409177","license":"MIT","moddate":"2026-03-22T20:20:57","packageid":62539,"repoid":1,"slot":"0\/3","uses":["bzip2","curl","lzma"],"version":"1.22.1"},{"archs":["~amd64","~x86"],"ebuildid":868036,"firstseen":"2025-06-22T17:03:35.273056","license":"MIT","moddate":"2026-03-22T20:20:57","packageid":62539,"repoid":1,"slot":"0\/3","uses":["bzip2","curl","lzma"],"version":"1.22"},{"archs":["~amd64","~x86"],"ebuildid":883139,"firstseen":"2025-11-29T13:56:37.409177","license":"MIT","moddate":"2026-03-22T20:20:57","packageid":62539,"repoid":1,"slot":"0\/3","uses":["bzip2","curl","lzma"],"version":"1.21"},{"archs":["amd64","~x86"],"ebuildid":827638,"firstseen":"2024-05-24T10:23:34.593305","license":"MIT","moddate":"2026-03-22T20:20:57","packageid":62539,"repoid":1,"slot":"0\/3","uses":["bzip2","curl","lzma"],"version":"1.20"}],"masks":[],"package":{"categoryid":318,"description":"C library for high-throughput sequencing data formats","firstseen":"2014-09-21T13:51:26.076524","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"htslib","packageid":62539},"rdependencies":[{"block":false,"categoryid":449,"description":"A high-quality data compressor used extensively by Gentoo Linux","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"bzip2","packageid":47649},{"block":false,"categoryid":449,"description":"Utils for managing LZMA compressed files","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"xz-utils","packageid":53735},{"block":false,"categoryid":451,"description":"A Client that groks URLs","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"blueness@gentoo.org","maintainername":"Anthony G. Basile","name":"curl","packageid":54768},{"block":false,"categoryid":396,"description":"Virtual for libz.so providers","ebuildids":[827638,868036,883139,883140,888654],"firstseen":"2025-11-04T07:31:41.418357","name":"zlib","packageid":78605}],"repos":[{"branch":"master","lastcommit":"f87ce2b74421571078063820dc1065e7089c9fa7","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/www.htslib.org\/"],"uses":[{"defaultflag":true,"description":"Enable bzip2 compression support","isdefault":true,"use":"bzip2"},{"description":"Add support for client-side URL transfer library","isdefault":false,"use":"curl"},{"defaultflag":true,"description":"Support for LZMA compression algorithm","isdefault":true,"use":"lzma"}]}