Versions
v1.20 :: 0/3 :: gentoo
- Modified
- License
- MIT
- Keywords
- ~amd64 ~amd64-linux ~x86 ~x86-linux
- USE flags
- bzip2 curl lzma
v1.19.1 :: 0/3 :: gentoo
- Modified
- License
- MIT
- Keywords
- ~amd64 ~amd64-linux ~x86 ~x86-linux
- USE flags
- bzip2 curl lzma
USE flags
General
Dependencies
app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux
app-arch / xz-utils : Utils for managing LZMA compressed files
Runtime Dependencies
app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux
app-arch / xz-utils : Utils for managing LZMA compressed files
Depending packages
dev-perl / Bio-DB-HTS : Perl bindings for sci-libs/htslib
sci-biology / STAR : STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays
sci-biology / augustus : Eukaryotic gene predictor
sci-biology / bcftools : Utilities for variant calling and manipulating VCF and BCF files
sci-biology / kallisto : Near-optimal RNA-Seq quantification
sci-biology / pysam : Python interface for the SAM/BAM sequence alignment and mapping format
sci-biology / samtools : Utilities for analysing and manipulating the SAM/BAM alignment formats
Bugs
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: add 1.20
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-libs/htslib: drop 1.17
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: add 1.19.1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: drop 1.16
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: add 1.17
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: drop 1.15.1
Closes: https://github.com/gentoo/gentoo/pull/29661 Closes: https://bugs.gentoo.org/873310 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: add 1.16
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: drop 1.13, 1.15
Closes: https://github.com/gentoo/gentoo/pull/25964 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: add 1.15.1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: add 1.15
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: drop 1.10.2
Bug: https://bugs.gentoo.org/799788 Signed-off-by: David Seifert <soap@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/22556 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: add 1.13
Bug: https://bugs.gentoo.org/799788 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: Remove old 1.9
Closes: https://bugs.gentoo.org/725270 Closes: https://github.com/gentoo/gentoo/pull/18592 Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: Remove old
Closes: https://github.com/gentoo/gentoo/pull/16982 Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: Bump to version 1.10.2
Bug: https://bugs.gentoo.org/725270 Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
sci-libs/htslib: x86 stable wrt bug #713236
Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-libs/htslib: amd64 stable wrt bug #713236
Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/htslib: Version bump to 1.9
Bug: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11 - David Seifert · gentoo
sci-libs/htslib: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/5593 - David Seifert · gentoo
sci-libs/htslib: Bump to version 1.5
Package-Manager: Portage-2.3.6, Repoman-2.3.3 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - David Seifert · gentoo
sci-libs/htslib: version bump
Package-Manager: portage-2.3.0 - David Seifert · gentoo
sci-libs/htslib: Version bump to 1.3
Package-Manager: portage-2.2.28 - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed