sci-libs / htslib

C library for high-throughput sequencing data formats

Official package sites : http://www.htslib.org/ ·

v1.9 :: 0/2 :: gentoo

Modified
License
MIT
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
bzip2 curl lzma static-libs

v1.5 :: 0/2 :: gentoo

Modified
License
MIT
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
bzip2 curl lzma static-libs

General

bzip2
Use the bzlib compression library
bzip2
Use the bzlib compression library
curl
Add support for client-side URL transfer library
lzma
Support for LZMA (de)compression algorithm
lzma
Support for LZMA (de)compression algorithm
static-libs
Build static versions of dynamic libraries as well

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

app-arch / xz-utils : utils for managing LZMA compressed files

net-misc / curl : A Client that groks URLs

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

app-arch / xz-utils : utils for managing LZMA compressed files

net-misc / curl : A Client that groks URLs

dev-perl / Bio-DB-HTS : Perl bindings for sci-libs/htslib

sci-biology / STAR : STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays

sci-biology / bcftools : Utilities for variant calling and manipulating VCF and BCF files

sci-biology / bedtools : Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats

sci-biology / pysam : Python interface for the SAM/BAM sequence alignment and mapping format

sci-biology / samtools : Utilities for analysing and manipulating the SAM/BAM alignment formats

645674
sci-libs/htslib - provide USE flags for curl and gcs s3 plugins
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-libs/htslib: Version bump to 1.9
Bug: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11
David Seifert · gentoo
sci-libs/htslib: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/5593
David Seifert · gentoo
sci-libs/htslib: Bump to version 1.5
Package-Manager: Portage-2.3.6, Repoman-2.3.3
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
David Seifert · gentoo
sci-libs/htslib: version bump
Package-Manager: portage-2.3.0
David Seifert · gentoo
sci-libs/htslib: Version bump to 1.3
Package-Manager: portage-2.2.28
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed