sci-libs / netcdf

Scientific library and interface for array oriented data access

Official package sites : https://www.unidata.ucar.edu/software/netcdf/ ·

NetCDF (network Common Data Form) is an interface for scientific data access and a freely-distributed software library that provides an implementation of the interface. The netCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data.

v4.9.2-r1 :: 0/19 :: gentoo

Modified
License
UCAR-Unidata
Keywords
-riscv amd64 arm64 ppc64 ~amd64-linux ~arm ~ppc ~x86 ~x86-linux
USE flags
blosc bzip2 dap doc examples hdf hdf5 mpi szip test zstd

v4.9.2 :: 0/19 :: gentoo

Modified
License
UCAR-Unidata
Keywords
-riscv amd64 ppc64 ~amd64-linux ~arm ~arm64 ~ppc ~x86 ~x86-linux
USE flags
dap doc examples hdf hdf5 mpi szip test

General

blosc
Allow using blosc compression via dev-libs/c-blosc
bzip2
Enable bzip2 compression support
dap
Support for remote data access with the built-in OPeNDAP client
doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
examples
Install examples, usually source code
hdf
Build with HDF4 read capability(sci-libs/hdf, sci-libs/hdf5 and sys-libs/zlib required).
hdf5
Add support for the Hierarchical Data Format v5
mpi
Add MPI (Message Passing Interface) layer to the apps that support it
szip
Use the szip compression library
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
zstd
Enable support for ZSTD compression

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

app-arch / zstd : zstd fast compression library

dev-libs / c-blosc : Blocking, shuffling and lossless compression library

dev-libs / libxml2 : XML C parser and toolkit

media-libs / libjpeg-turbo : MMX, SSE, and SSE2 SIMD accelerated JPEG library

net-misc / curl : A Client that groks URLs

sci-libs / hdf : General purpose library and format for storing scientific data

sci-libs / hdf5 : General purpose library and file format for storing scientific data

sys-libs / zlib : Standard (de)compression library

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

app-arch / zstd : zstd fast compression library

dev-libs / c-blosc : Blocking, shuffling and lossless compression library

dev-libs / libxml2 : XML C parser and toolkit

media-libs / libjpeg-turbo : MMX, SSE, and SSE2 SIMD accelerated JPEG library

net-misc / curl : A Client that groks URLs

sci-libs / hdf : General purpose library and format for storing scientific data

sci-libs / hdf5 : General purpose library and file format for storing scientific data

sys-libs / zlib : Standard (de)compression library

dev-lang / gdl : GNU Data Language

dev-python / netcdf4 : Python/numpy interface to the netCDF C library

sci-chemistry / pymol : A Python-extensible molecular graphics system

sci-chemistry / vmd : Visual Molecular Dynamics

sci-geosciences / gmt : Powerful map generator

sci-geosciences / grass : A free GIS with raster and vector functionality, as well as 3D vizualization

sci-geosciences / gshhs : Global Self-consistent, Hierarchical, High-resolution Shoreline programs

sci-geosciences / qgis : User friendly Geographic Information System

sci-libs / eccodes : A set of encoding/decoding APIs and tools for WMO GRIB, BUFR, and GTS messages

sci-libs / exodusii : Model developed to store and retrieve transient data for finite element analyses

sci-libs / gdal : Translator library for raster geospatial data formats (includes OGR support)

sci-libs / gerris : Gerris Flow Solver

sci-libs / nemesis : Enhancement to the EXODUSII finite element database model

sci-libs / netcdf-cxx : C++ library for netCDF

sci-libs / netcdf-fortran : Scientific library and interface for array oriented data access

sci-libs / trilinos : Scientific library collection for large scale problems

sci-libs / vtk : The Visualization Toolkit

sci-misc / nco : Command line utilities for operating on netCDF files

sci-misc / ncview : X-based viewer for netCDF files

sci-physics / lammps : Large-scale Atomic/Molecular Massively Parallel Simulator

sci-visualization / grace : Motif based XY-plotting tool

sci-visualization / labplot : Scientific data analysis and visualisation based on KDE Frameworks

sci-visualization / paraview : Powerful scientific data visualization application

673200
sci-libs/netcdf-4.6.1-r1: test failures (t_dap3a, test_cvt3, test_vara, tst_ncdap3.sh)
795822
sci-libs/netcdf-4.7.4 QA Notice: The following files contain insecure RUNPATHs
827042
sci-libs/netcdf-4.7.4: nc_test fails when optimization level is -O2
830895
sci-libs/netcdf-4.8.1-r1 fails to compile: zip.h:285:21: error: expected :, ,, ;, } or __attribute__ before str
832873
sci-libs/netcdf-4.8.1-r1 - fails Test #183: nczarr_test_run_ut_mapapi
836910
sci-libs/netcdf-4.8.1-r1 - automagic dependency on dev-libs/libzip
851660
sci-libs/netcdf-4.8.1-r2 fails to compile on stable ppc: Could NOT find HDF5
901395
sci-libs/netcdf-4.9.2[doc]: failed to emerge
912666
sci-libs/netcdf-4.9.2 - error: source .../internal.md is not a readable file or directory..kipping.
924363
sci-libs/netcdf-4.9.2 installs pkg-config files that do not respect libdir
925853
sci-libs/netcdf-4.9.2 fails to compile: semantics.c:605:60: error: passing argument 2 of ncaux_class_alignment from incompatible pointer type [-Wincompatible-pointer-types]
933141
sci-libs/netcdf-4.9.2-r1 fails tests on ppc64 big-endian
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-libs/netcdf: Stabilize 4.9.2-r1 ppc64, #931347
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Arthur Zamarin · gentoo
*/*: unkeyword ~ia64
Change was created by running the following command:: ekeyword ^ia64 */*/*.ebuild Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/netcdf: Stabilize 4.9.2-r1 arm64, #931347
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Matoro Mahri · gentoo
sci-libs/netcdf: Stabilize 4.9.2-r1 amd64, #931347
Signed-off-by: Matoro Mahri <matoro_gentoo@matoro.tk> Signed-off-by: Ionen Wolkens <ionen@gentoo.org>
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Eli Schwartz · gentoo
sci-libs/netcdf: fix bad bash scripting leading to failed tests
If USE=-mpi, a file in src_test is NOT sedded to fix a bug in the file, because the file does not exist. But this condition was incorrectly coded. In bash: ``` cmd1 && cmd2 || cmd3 ``` is a code smell. If either of the first two commands fails, the third command is run -- in this case, die. In other words, the first two commands were *supposed* to be "only run cmd2 if it makes sense to". Instead, if it "doesn't make sense to" run cmd2, the die was triggered. A more general solution is to spec the build format to require all commands to pass without manually `die`ing (leading to the use of && ceasing in general), but that is not how portage works. Either way, the solution is using `if` as intended. ref. https://mywiki.wooledge.org/BashGuide/TestsAndConditionals Closes: https://bugs.gentoo.org/933136 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
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Paul Zander · gentoo
sci-libs/netcdf: cmake rework, fix bug 886155
Remove cmake automagic for file filters. Make test run in parallel that failed due to mpi failures. Filter cmake targets file further. Closes: https://bugs.gentoo.org/886155 Signed-off-by: Paul Zander <negril.nx+gentoo@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/35786 Signed-off-by: Sam James <sam@gentoo.org>
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Michał Górny · gentoo
Move {app-doc → app-text}/doxygen
Per the category metadata, app-doc/ is reserved for documentation *files* and not software. Move it to app-text/ where it seems a better fit. Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Andreas Sturmlechner · gentoo
sci-libs/netcdf: drop 4.8.1-r1, 4.8.1-r2
Closes: https://bugs.gentoo.org/886889 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/netcdf: destabilize for ~x86
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/netcdf: destabilize for ~ppc
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/netcdf: Stabilize 4.9.2 x86, #886889
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Arthur Zamarin · gentoo
sci-libs/netcdf: Stabilize 4.9.2 ppc, #886889
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
sci-libs/netcdf: Stabilize 4.9.2 ppc64, #886889
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Merge updates from master
Sam James · gentoo
sci-libs/netcdf: Stabilize 4.9.2 amd64, #886889
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: drop 4.9.0, 4.9.1
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/netcdf: add 4.9.2
- Drop no strict aliasing workaround as fixes landed in 4.9.2 - Force serial tests again, the fixes in 4.9.1 weren't enough - Unconditionally build tools, as they're needed for tests + have no extra deps. Bug: https://bugs.gentoo.org/621486 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: add 4.9.1
- -fno-strict-aliasing workaround still needed for now, may not be for next release. - Drop -j1 workaround as parallel test fixes landed upstream. Bug: https://bugs.gentoo.org/621486 Signed-off-by: Sam James <sam@gentoo.org>
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Andreas Sturmlechner · gentoo
sci-libs/netcdf: drop 4.7.4
Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
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brahmajit das · gentoo
sci-libs/netcdf: Fix musl missing execinfo.h check
Check if execinfo.h is present before including the header. The check is preset in other parts of the souce code, here it was only being checked if it's WIN32 or CYGIWIN before including execinfo.h as a result build was failing on musl. Closes: https://bugs.gentoo.org/828677 Signed-off-by: brahmajit das <brahmajit.xyz@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26284 Signed-off-by: Sam James <sam@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/netcdf: ppc64 stable wrt bug #851468
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/netcdf: amd64 stable wrt bug #851468
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: add 4.9.0
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: avoid broken libdl hardcoding
Closes: https://bugs.gentoo.org/827188 Signed-off-by: Sam James <sam@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/netcdf: ppc64 stable wrt bug #830880
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/netcdf: ppc stable wrt bug #830880
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Jakov Smolić · gentoo
sci-libs/netcdf: Stabilize 4.8.1-r1 amd64, #830880
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
Jakov Smolić · gentoo
sci-libs/netcdf: Stabilize 4.8.1-r1 x86, #830880
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: temporarily disable ENABLE_LIBXML2
It's not yet in a release, whoops. Closes: https://bugs.gentoo.org/830191 Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/netcdf: fix subslot
Closes: https://bugs.gentoo.org/830191 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: add 4.8.1
Doesn't seem to hardcode libdl path anymore which avoids glibc-2.34 issues. Closes: https://bugs.gentoo.org/827188 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: disable strict aliasing for now
Causes test failures. Bug: https://bugs.gentoo.org/827042 Signed-off-by: Sam James <sam@gentoo.org>
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Marek Szuba · gentoo
sci-libs/netcdf: keyword 4.7.4 for -riscv
Serious-looking test failures. Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Jakov Smolic · gentoo
sci-libs/netcdf: Remove old
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
sci-libs/netcdf: Stabilize 4.7.4 ppc64, #770649
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/netcdf: Stabilize 4.7.4 ppc, #770649
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/netcdf: fix big endian build/tests
Closes: https://bugs.gentoo.org/772863 Package-Manager: Portage-3.0.15, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-libs/netcdf: Stabilize 4.7.4 amd64, #770649
Signed-off-by: Sam James <sam@gentoo.org>
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Roy Bamford · gentoo
sci-libs/netcdf: added ~arm64 after p.u.m hdf
Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Roy Bamford <neddyseagoon@gentoo.org> Signed-off-by: Sam James <sam@gentoo.org>
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Thomas Deutschmann · gentoo
sci-libs/netcdf: x86 stable (bug #770649)
Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Thomas Deutschmann <whissi@gentoo.org>
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Pacho Ramos · gentoo
sci-libs/netcdf: Drop old
Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Pacho Ramos · gentoo
Revert "sci-libs/netcdf: Remove old"
This reverts commit d7fda45912661dcccd5ec1dd17ca0b5831ac66d0 because it removed latest stable version Signed-off-by: Pacho Ramos <pacho@gentoo.org>
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Jakov Smolic · gentoo
sci-libs/netcdf: Remove old
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
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Jakov Smolic · gentoo
sci-libs/netcdf: Bump to 4.7.4
Closes: https://github.com/gentoo/gentoo/pull/18739 Closes: https://bugs.gentoo.org/682340 Closes: https://bugs.gentoo.org/711460 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org>
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Matt Turner · gentoo
*/*: Drop stable ia64 keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org>
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David Seifert · gentoo
sci-libs/netcdf: [QA] inherit ltprune.eclass directly
Package-Manager: Portage-2.3.88, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
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Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Matt Turner · gentoo
sci-libs/netcdf: Drop old versions
Signed-off-by: Matt Turner <mattst88@gentoo.org>
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Merge updates from master
Sergei Trofimovich · gentoo
sci-libs/netcdf: stable 4.6.1-r1 for ia64, bug #641344
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 RepoMan-Options: --include-arches="ia64"
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Merge updates from master
Mikle Kolyada · gentoo
sci-libs/netcdf: amd64 stable wrt bug #641344
Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> Package-Manager: Portage-2.3.49, Repoman-2.3.11
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Thomas Deutschmann · gentoo
sci-libs/netcdf: x86 stable (bug #641344)
Package-Manager: Portage-2.3.50, Repoman-2.3.11 Signed-off-by: Thomas Deutschmann <whissi@gentoo.org>
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Pacho Ramos · gentoo
sci-libs/netcdf: Update subslot (#654036 by Jouni Kosonen)
Package-Manager: Portage-2.3.50, Repoman-2.3.11 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
Michael Mair-Keimberger · gentoo
sci-libs/netcdf: use HTTPS
Matthias Maier · gentoo
sci-libs/netcdf: remove unused configure options
Package-Manager: Portage-2.3.31, Repoman-2.3.9
Matthias Maier · gentoo
sci-libs/netcdf: version bump to 4.6.1
Package-Manager: Portage-2.3.31, Repoman-2.3.9
Sergei Trofimovich · gentoo
sci-libs/netcdf: stable 4.3.2-r1 for ia64, bug #627018
Package-Manager: Portage-2.3.8, Repoman-2.3.3 RepoMan-Options: --include-arches="ia64"
Sergei Trofimovich · gentoo
sci-libs/netcdf: make tests sequential, bug #621486
Parallel tests fail consistently on 4-core and 8-core systems. I suspect same temporary file reuse. Bug: https://bugs.gentoo.org/621486 Package-Manager: Portage-2.3.6, Repoman-2.3.2
Sergei Trofimovich · gentoo
sci-libs/netcdf: ia64 keyworded, bug #615510
Package-Manager: Portage-2.3.6, Repoman-2.3.2 RepoMan-Options: --include-arches="ia64"
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Pacho Ramos · gentoo
sci-libs/netcdf: Version bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Pacho Ramos · gentoo
sci-libs/netcdf: hl support is needed for hdf5 versions that allow it to be disabled (#599600).
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Pacho Ramos · gentoo
sci-libs/netcdf: Drop old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/sbraz/pycountry'
Pull request: https://github.com/gentoo/gentoo/pull/721
David Seifert · gentoo
sci-libs/netcdf: Replace 'doins' with 'dodoc -r'
Package-Manager: portage-2.2.27
David Seifert · gentoo
sci-libs/netcdf: port to EAPI=6, remove 'autotools-utils' usage
Package-Manager: portage-2.2.27
Justin Lecher · gentoo
Merge branch 'Reinis-netcdf'
* Reinis-netcdf: sci-libs/netcdf-fortran: Version bump to 4.4.2 sci-libs/netcdf: Version bump to 4.4.0
Reinis Danne · gentoo
sci-libs/netcdf: Version bump to 4.4.0
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed