Summary
NetCDF (network Common Data Form) is an interface for scientific data access and a freely-distributed software library that provides an implementation of the interface. The netCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data.
Versions
v4.8.1-r1 :: 0/19 :: gentoo
- Modified
- License
- UCAR-Unidata
- Keywords
- -riscv amd64 x86 ~amd64-linux ~arm ~arm64 ~ia64 ~ppc ~ppc64 ~x86-linux
- USE flags
- dap doc examples hdf hdf5 mpi szip test tools
v4.7.4 :: 0/18 :: gentoo
- Modified
- License
- UCAR-Unidata
- Keywords
- -riscv amd64 ppc ppc64 x86 ~amd64-linux ~arm ~arm64 ~ia64 ~x86-linux
- USE flags
- dap doc examples hdf hdf5 mpi szip test tools
USE flags
General
- dap
- Support for remote data access with the built-in OPeNDAP client
- doc
- Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
- examples
- Install examples, usually source code
- hdf
- Add support for the Hierarchical Data Format v.4 sci-libs/hdf
- hdf5
- Add support for the Hierarchical Data Format v5
- mpi
- Add MPI (Message Passing Interface) layer to the apps that support it
- szip
- Use the szip compression library
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
- tools
- Build the utilities nccopy, ncgen and ncdump
Dependencies
dev-libs / libxml2 : XML C parser and toolkit
net-misc / curl : A Client that groks URLs
sci-libs / hdf : General purpose library and format for storing scientific data
sci-libs / hdf5 : General purpose library and file format for storing scientific data
virtual / jpeg : Virtual to select between libjpeg-turbo and IJG jpeg for source-based packages
Runtime Dependencies
dev-libs / libxml2 : XML C parser and toolkit
net-misc / curl : A Client that groks URLs
sci-libs / hdf : General purpose library and format for storing scientific data
sci-libs / hdf5 : General purpose library and file format for storing scientific data
virtual / jpeg : Virtual to select between libjpeg-turbo and IJG jpeg for source-based packages
Depending packages
dev-lang / gdl : GNU Data Language
dev-python / netcdf4-python : Python/numpy interface to the netCDF C library
sci-chemistry / pymol : A Python-extensible molecular graphics system
sci-chemistry / vmd : Visual Molecular Dynamics
sci-geosciences / gmt : Powerful map generator
sci-geosciences / grass : A free GIS with raster and vector functionality, as well as 3D vizualization
sci-geosciences / gshhs : Global Self-consistent, Hierarchical, High-resolution Shoreline programs
sci-geosciences / qgis : User friendly Geographic Information System
sci-libs / eccodes : A set of encoding/decoding APIs and tools for WMO GRIB, BUFR, and GTS messages
sci-libs / exodusii : Model developed to store and retrieve transient data for finite element analyses
sci-libs / gdal : Translator library for raster geospatial data formats (includes OGR support)
sci-libs / gerris : Gerris Flow Solver
sci-libs / nemesis : Enhancement to the EXODUSII finite element database model
sci-libs / netcdf-cxx : C++ library for netCDF
sci-libs / netcdf-fortran : Scientific library and interface for array oriented data access
sci-libs / trilinos : Scientific library collection for large scale problems
sci-libs / vtk : The Visualization Toolkit
sci-misc / nco : Command line utilities for operating on netCDF files
sci-misc / ncview : X-based viewer for netCDF files
sci-physics / lammps : Large-scale Atomic/Molecular Massively Parallel Simulator
sci-visualization / grace : Motif based XY-plotting tool
sci-visualization / gri : Language for scientific graphics programming
sci-visualization / labplot : Scientific data analysis and visualisation based on KDE Frameworks
sci-visualization / opendx : 3D data visualization tool
sci-visualization / paraview : Powerful scientific data visualization application
Bugs
- 671980
- sci-libs/netcdf-4.6.1-r1: fails tst_filterparser and tst_filter.sh on ppc
- 673200
- sci-libs/netcdf-4.6.1-r1: test failures (t_dap3a, test_cvt3, test_vara, tst_ncdap3.sh)
- 772866
- sci-libs/netcdf-4.7.4: test failure (nc_test4_tst_filter) on ppc/ppc64
- 795822
- sci-libs/netcdf-4.7.4 QA Notice: The following files contain insecure RUNPATHs
- 827042
- sci-libs/netcdf-4.7.4: nc_test fails when optimization level is -O2
- 827188
- sci-libs/netcdf-4.7.4: hardcodes path to libdl.so in CMake files (was: sci-libs/vtk-9.0.3-r1 fails to build with sys-libs/glibc-2.34-r2 -- missing /usr/lib64/libdl.so symlink)
- 828677
- sci-libs/netcdf-4.8.1-r1 - /.../hdf5debug.c: fatal error: execinfo.h: No such file or directory
- 830880
- sci-libs/netcdf-4.8.1-r1 stabilisation
- 830895
- sci-libs/netcdf-4.8.1-r1 fails to compile: zip.h:285:21: error: expected :, ,, ;, } or __attribute__ before str
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
sci-libs/netcdf: Stabilize 4.8.1-r1 amd64, #830880
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Jakov Smolić · gentoo
sci-libs/netcdf: Stabilize 4.8.1-r1 x86, #830880
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/netcdf: temporarily disable ENABLE_LIBXML2
It's not yet in a release, whoops. Closes: https://bugs.gentoo.org/830191 Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
sci-libs/netcdf: fix subslot
Closes: https://bugs.gentoo.org/830191 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/netcdf: add 4.8.1
Doesn't seem to hardcode libdl path anymore which avoids glibc-2.34 issues. Closes: https://bugs.gentoo.org/827188 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/netcdf: disable strict aliasing for now
Causes test failures. Bug: https://bugs.gentoo.org/827042 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Marek Szuba · gentoo
sci-libs/netcdf: keyword 4.7.4 for -riscv
Serious-looking test failures. Signed-off-by: Marek Szuba <marecki@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolic · gentoo
sci-libs/netcdf: Remove old
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-libs/netcdf: Stabilize 4.7.4 ppc64, #770649
Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
sci-libs/netcdf: Stabilize 4.7.4 ppc, #770649
Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
sci-libs/netcdf: fix big endian build/tests
Closes: https://bugs.gentoo.org/772863 Package-Manager: Portage-3.0.15, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
sci-libs/netcdf: Stabilize 4.7.4 amd64, #770649
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Roy Bamford · gentoo
sci-libs/netcdf: added ~arm64 after p.u.m hdf
Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Roy Bamford <neddyseagoon@gentoo.org> Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Thomas Deutschmann · gentoo
sci-libs/netcdf: x86 stable (bug #770649)
Package-Manager: Portage-3.0.14, Repoman-3.0.2 Signed-off-by: Thomas Deutschmann <whissi@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-libs/netcdf: Drop old
Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Pacho Ramos · gentoo
Revert "sci-libs/netcdf: Remove old"
This reverts commit d7fda45912661dcccd5ec1dd17ca0b5831ac66d0 because it removed latest stable version Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolic · gentoo
sci-libs/netcdf: Remove old
Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolic · gentoo
sci-libs/netcdf: Bump to 4.7.4
Closes: https://github.com/gentoo/gentoo/pull/18739 Closes: https://bugs.gentoo.org/682340 Closes: https://bugs.gentoo.org/711460 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
*/*: Drop stable ia64 keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-libs/netcdf: [QA] inherit ltprune.eclass directly
Package-Manager: Portage-2.3.88, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
sci-libs/netcdf: Drop old versions
Signed-off-by: Matt Turner <mattst88@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sergei Trofimovich · gentoo
sci-libs/netcdf: stable 4.6.1-r1 for ia64, bug #641344
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> Package-Manager: Portage-2.3.51, Repoman-2.3.11 RepoMan-Options: --include-arches="ia64" - Repository mirror & CI · gentoo
Merge updates from master - Mikle Kolyada · gentoo
sci-libs/netcdf: amd64 stable wrt bug #641344
Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> Package-Manager: Portage-2.3.49, Repoman-2.3.11 - Repository mirror & CI · gentoo
Merge updates from master - Thomas Deutschmann · gentoo
sci-libs/netcdf: x86 stable (bug #641344)
Package-Manager: Portage-2.3.50, Repoman-2.3.11 Signed-off-by: Thomas Deutschmann <whissi@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
sci-libs/netcdf: Update subslot (#654036 by Jouni Kosonen)
Package-Manager: Portage-2.3.50, Repoman-2.3.11 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Michael Mair-Keimberger · gentoo
sci-libs/netcdf: use HTTPS - Matthias Maier · gentoo
sci-libs/netcdf: remove unused configure options
Package-Manager: Portage-2.3.31, Repoman-2.3.9 - Matthias Maier · gentoo
sci-libs/netcdf: version bump to 4.6.1
Package-Manager: Portage-2.3.31, Repoman-2.3.9 - Sergei Trofimovich · gentoo
sci-libs/netcdf: stable 4.3.2-r1 for ia64, bug #627018
Package-Manager: Portage-2.3.8, Repoman-2.3.3 RepoMan-Options: --include-arches="ia64" - Sergei Trofimovich · gentoo
sci-libs/netcdf: make tests sequential, bug #621486
Parallel tests fail consistently on 4-core and 8-core systems. I suspect same temporary file reuse. Bug: https://bugs.gentoo.org/621486 Package-Manager: Portage-2.3.6, Repoman-2.3.2 - Sergei Trofimovich · gentoo
sci-libs/netcdf: ia64 keyworded, bug #615510
Package-Manager: Portage-2.3.6, Repoman-2.3.2 RepoMan-Options: --include-arches="ia64" - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - T. Malfatti · gentoo
media-libs/portaudio: Version bump - Pacho Ramos · gentoo
sci-libs/netcdf: Version bump
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Pacho Ramos · gentoo
sci-libs/netcdf: hl support is needed for hdf5 versions that allow it to be disabled (#599600).
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Pacho Ramos · gentoo
sci-libs/netcdf: Drop old
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/sbraz/pycountry'
Pull request: https://github.com/gentoo/gentoo/pull/721 - David Seifert · gentoo
sci-libs/netcdf: Replace 'doins' with 'dodoc -r'
Package-Manager: portage-2.2.27 - David Seifert · gentoo
sci-libs/netcdf: port to EAPI=6, remove 'autotools-utils' usage
Package-Manager: portage-2.2.27 - Justin Lecher · gentoo
Merge branch 'Reinis-netcdf'
* Reinis-netcdf: sci-libs/netcdf-fortran: Version bump to 4.4.2 sci-libs/netcdf: Version bump to 4.4.0 - Reinis Danne · gentoo
sci-libs/netcdf: Version bump to 4.4.0 - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed