{"bugs":[{"bugid":607632,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"[science overlay] sci-libs\/profphd-utils-1.0.10-r1 file collision with sci-biology\/ncbi-tools++-12.0.0 on \/usr\/bin\/convert_seq"}],"categories":[{"categoryid":425,"name":"dev-perl","summary":"The dev-perl category contains libraries and utilities relevant to the Perl programming language."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":60678,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen ","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":60678,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"82b37a27e889ff1af7cfc1e3a8c2f06ef8622566","committime":"2022-03-20T19:04:16","packageid":60678,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"This can cause build problems for e.g. 32-bit (gcc -m32 ...)\n\nSigned-off-by: Sam James ","commitid":"c3ba314b2ff783ea1319afd18d5272727890ebbc","committime":"2022-03-20T18:50:23","packageid":60678,"repoid":1,"summary":"sci-libs\/profphd-utils: [QA] fix tc-get* quoting"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3d4eaa9a9790c5956e454eda213b853490da09f7","committime":"2021-08-22T19:51:19","packageid":60678,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jakov.smolic@sartura.hr","authorname":"Jakov Smolic","body":"Signed-off-by: Jakov Smolic \nSigned-off-by: David Seifert ","commitid":"7ccaa2991759fa6e7142c9a7c33439d748405337","committime":"2021-08-22T19:37:15","packageid":60678,"repoid":1,"summary":"sci-libs\/profphd-utils: Port to EAPI 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8f384f131077d603c01ac9a1187e0b90d10a44e4","committime":"2021-01-17T13:02:34","packageid":60678,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jakov.smolic@sartura.hr","authorname":"Jakov Smolic","body":"Signed-off-by: Jakov Smolic \nSigned-off-by: David Seifert ","commitid":"1fa833a5432a4a823b18c8ba6e6d3603941b711a","committime":"2021-01-17T11:51:01","packageid":60678,"repoid":1,"summary":"sci-libs\/profphd-utils: Remove old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":60678,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":60678,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":60678,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":60678,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":60678,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":396,"description":"Virtual for Fortran Compiler","ebuildids":[531041],"firstseen":"2011-04-15T18:23:49.887464","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fortran","packageid":57236}],"depending":[{"block":false,"categoryid":353,"description":"Secondary structure and solvent accessibility predictor","ebuildids":[513346],"firstseen":"2013-03-19T14:35:58.051770","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"profphd","packageid":60559},{"block":false,"categoryid":425,"description":"Parsers and format conversion utilities used by (e.g.) profphd","ebuildids":[754784],"firstseen":"2013-04-25T13:35:58.729909","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"librg-utils-perl","packageid":60683}],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":531041,"firstseen":"2014-11-24T14:37:52.602739","license":"GPL-3","moddate":"2026-03-22T20:20:57","packageid":60678,"repoid":1,"slot":"0","uses":[],"version":"1.0.10-r1"}],"masks":[],"package":{"categoryid":318,"description":"Additional utils for profphd","firstseen":"2013-04-25T13:35:58.729909","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"profphd-utils","packageid":60678},"rdependencies":[{"block":false,"categoryid":396,"description":"Virtual for Fortran Compiler","ebuildids":[531041],"firstseen":"2011-04-15T18:23:49.887464","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fortran","packageid":57236}],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/rostlab.org\/"],"uses":[]}