sci-libs / scipy

Scientific algorithms library for Python

Official package sites : https://www.scipy.org/ ·

SciPy is an open source library of scientific tools for Python. SciPy supplements the popular numpy module, gathering a variety of high level science and engineering modules together as a single package. SciPy includes modules for graphics and plotting, optimization, integration, special functions, signal and image processing, genetic algorithms, ODE solvers, and others.

v1.5.2 :: 0 :: gentoo

Modified
License
BSD LGPL-2
Keywords
~amd64 ~amd64-linux ~arm ~arm64 ~ppc ~ppc-macos ~ppc64 ~x86 ~x86-linux ~x86-macos
USE flags
doc sparse test

v1.5.1 :: 0 :: gentoo

Modified
License
BSD LGPL-2
Keywords
~amd64 ~amd64-linux ~arm ~arm64 ~ppc ~ppc-macos ~ppc64 ~x86 ~x86-linux ~x86-macos
USE flags
doc sparse test

v1.5.0 :: 0 :: gentoo

Modified
License
BSD LGPL-2
Keywords
~amd64 ~amd64-linux ~arm ~arm64 ~ppc ~ppc-macos ~ppc64 ~x86 ~x86-linux ~x86-macos
USE flags
doc sparse test

v1.4.1 :: 0 :: gentoo

Modified
License
BSD LGPL-2
Keywords
amd64 x86 ~amd64-linux ~arm ~arm64 ~ppc ~ppc-macos ~ppc64 ~x86-linux ~x86-macos
USE flags
doc sparse test

v1.1.0 :: 0 :: gentoo

Modified
License
BSD LGPL-2
Keywords
amd64 ppc ppc64 x86 ~amd64-linux ~arm ~arm64 ~ppc-macos ~x86-linux ~x86-macos
USE flags
doc sparse test

General

doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
sparse
Adds support for sparse solving with sci-libs/umfpack
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

python_targets

python3_6
Build with Python 3.6
python3_7
Build with Python 3.7
python3_8
Build with Python 3.8
python3_9
Build with Python 3.9

app-arch / unzip : unzipper for pkzip-compressed files

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-lang / swig : Simplified Wrapper and Interface Generator

dev-python / cython : A Python to C compiler

dev-python / nose : Unittest extension with automatic test suite discovery and easy test authoring

dev-python / numpy : Fast array and numerical python library

dev-python / pybind11 : AST-based Python refactoring library

dev-python / pytest : Simple powerful testing with Python

dev-python / setuptools : Collection of extensions to Distutils

sci-libs / arpack : Arnoldi package library to solve large scale eigenvalue problems

sci-libs / umfpack : Unsymmetric multifrontal sparse LU factorization library

virtual / cblas : Virtual for BLAS C implementation

virtual / fortran : Virtual for Fortran Compiler

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

virtual / pkgconfig : Virtual for the pkg-config implementation

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-python / numpy : Fast array and numerical python library

dev-python / pillow : Python Imaging Library (fork)

sci-libs / arpack : Arnoldi package library to solve large scale eigenvalue problems

sci-libs / umfpack : Unsymmetric multifrontal sparse LU factorization library

virtual / cblas : Virtual for BLAS C implementation

virtual / fortran : Virtual for Fortran Compiler

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

dev-python / GridDataFormats : Reading and writing of data on regular grids in Python

dev-python / algopy : Taylor Arithmetic Computation and Algorithmic Differentiation

dev-python / bottleneck : Fast NumPy array functions written in Cython

dev-python / dask : Task scheduling and blocked algorithms for parallel processing

dev-python / graph-tool : An efficient python module for manipulation and statistical analysis of graphs

dev-python / moviepy : Video editing with Python

dev-python / networkx : Python tools to manipulate graphs and complex networks

dev-python / oct2py : Python to GNU Octave bridge

dev-python / pandas : Powerful data structures for data analysis and statistics

dev-python / patsy : Python module to describe statistical models and design matrices

dev-python / pslab-python : Python library for communicating with Pocket Science Lab

dev-python / pweave : Scientific report generator and literate programming tool

dev-python / pyamg : Algebraic multigrid solvers in Python

dev-python / pyqtgraph : A pure-python graphics and GUI library built on PyQt and numpy

dev-python / seaborn : Statistical data visualization

dev-python / simplespectral : Heavily simplified scipy.signal.spectral module

dev-python / spyder : The Scientific Python Development Environment

dev-python / spyder-kernels : Kernels used by spyder on its ipython console

dev-python / statsmodels : Statistical computations and models for use with SciPy

dev-python / theano : Define and optimize multi-dimensional arrays mathematical expressions

dev-python / tikzplotlib : Convert matplotlib figures into TikZ/PGFPlots

dev-python / uranium : A Python framework for building 3D printing related applications

dev-python / xarray : N-D labeled arrays and datasets in Python

dev-ros / calibration_estimation : Runs an optimization to estimate the a robot's kinematic parameters

net-wireless / gnuradio : Toolkit that provides signal processing blocks to implement software radios

net-wireless / soapy_power : Obtain power spectrum from SoapySDR devices

sci-biology / biopandas : Molecular Structures in Pandas DataFrames

sci-chemistry / MDAnalysis : A python library to analyze and manipulate molecular dynamics trajectories

sci-chemistry / ParmEd : Parameter/topology editor and molecular simulator

sci-chemistry / chemex : Program to fit chemical exchange induced shift and relaxation data

sci-chemistry / mdtraj : Read, write and analyze MD trajectories with only a few lines of Python code

sci-chemistry / nmrglue : A module for working with NMR data in Python

sci-libs / cartopy : Python package for geospatial data processing and analysis

sci-libs / keras-preprocessing : Easy data preprocessing and data augmentation for deep learning models

sci-libs / scikits_image : Image processing routines for SciPy

sci-libs / scikits_learn : Machine learning library for Python

sci-libs / scikits_timeseries : SciPy module for manipulating, reporting, and plotting time series

sci-libs / shogun : Large Scale Machine Learning Toolbox

sci-mathematics / pymc3 : Bayesian Modeling and Probabilistic Machine Learning in Python

sci-physics / qmeq : Quantum master equation package for Quantum dot transport calculations

sci-physics / qutip : Simulating dynamics of open quantum systems in Python.

sci-visualization / pythonprop : Scripts to prepare and plot VOACAP propagation predictions

sci-visualization / pyxplot : Gnuplot like graphing program publication-quality figures

sci-visualization / tensorboard : TensorFlow's Visualization Toolkit

sys-cluster / ceph : Ceph distributed filesystem

236332
sci-libs/scipy mixes CFLAGS and CXXFLAGS
555228
sci-libs/scipy-0.15.1 - ImportError: cannot import name scimath
622948
sci-libs/scipy-0.19.1 - from six.moves import urllib, map, filter ImportError: No module named moves
676640
sci-libs/scipy-1.1.0 python-3.7 "object of type 'type' has no len()" in evaluating 'len(list)' (available names: [])
715032
dev-python/pillow-7.0.0 cannot be installed because of sci-libs/scipy-1.1.0 and media-gfx/uniconvertor-2.0_pre379-r2
722660
sci-libs/scipy-1.4.1: please stabilize
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-libs/scipy: Remove py2.7
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Merge updates from master
Michał Górny · gentoo
sci-libs/scipy: Bump to 1.5.2
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Michał Górny · gentoo
sci-libs/scipy: Bump to 1.5.1
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Merge updates from master
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-libs/scipy: Bump to 1.5.0
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Sam James (sam_c) · gentoo
sci-libs/scipy: arm64 keyworded (bug #715962)
Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Sam James (sam_c) <sam@cmpct.info> Signed-off-by: Mart Raudsepp <leio@gentoo.org>
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David Seifert · gentoo
sci-libs/scipy: Conditionally add -fallow-argument-mismatch
Closes: https://bugs.gentoo.org/721860 Package-Manager: Portage-2.3.101, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org>
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Michał Górny · gentoo
sci-libs/scipy: Revert "-fallow-argument-mismatch for gfortran v10"
This breaks older gcc versions. Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Alexei Colin · gentoo
sci-libs/scipy: -fallow-argument-mismatch for gfortran v10
Already fixed in upstream master: https://github.com/scipy/scipy/pull/11842 Closes: https://bugs.gentoo.org/721860 Signed-off-by: Alexei Colin <acolin@isi.edu> Closes: https://github.com/gentoo/gentoo/pull/16093 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
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Michał Górny · gentoo
sci-libs/scipy: Port to py39
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Merge updates from master
Michał Górny · gentoo
sci-libs/scipy: Remove unmaintained live ebuild
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Michał Górny · gentoo
sci-libs/scipy: Fix running tests
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Merge updates from master
Agostino Sarubbo · gentoo
sci-libs/scipy: x86 stable wrt bug #722660
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Agostino Sarubbo · gentoo
sci-libs/scipy: amd64 stable wrt bug #722660
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Roy Bamford · gentoo
sci-libs/scipy: added ~arm64 keyword
Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Roy Bamford <neddyseagoon@gentoo.org> Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Michał Górny · gentoo
sci-libs/scipy: Revert "fixing numpy deps"
Change done in explicit violation of maintainer's request. Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Rick Farina · gentoo
sci-libs/scipy: fixing numpy deps
Package-Manager: Portage-2.3.85, Repoman-2.3.20 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
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Benda Xu · gentoo
sci-libs/scipy: disable parallel build completely.
After 4 years discussion and debugging, we conclude that Python 3 is deeply broken in parallel builds for anything involving compiling of C/C++/fortran code. The problem is universal, regardless how dev-python/numpy is built. Numpy and scipy upstream cannot do anything about this. We bite the bullet and disable parallel build of scipy completely. Thanks to all who have contributed to this heroic marathon debugging. We regret that only a workaround can be provided at this moment. Credit: Andrés Becerra Sandoval, Hendrik v. Raven, younky.yang@yahoo.com Credit: matoro, Denis Descheneaux, Mathy Vanvoorden, email200202@yahoo.com Credit: jon R-B, Anton Kochkov, Jonas Stein, edes, David Duchesne Credit: thulle, Mathy Vanvoorden, Sasha Medvedev, rtgiskard@gmail.com Credit: Lukasz Ligowski, Zentoo, Jouni Kosonen, Neil, Harris Landgarten Credit: Markus Oehme, Andreas Proteus Suggested-By: François Bissey, Arfrever Frehtes Taifersar Arahesis Reference: https://github.com/numpy/numpy/issues/13080 Reference: https://github.com/scipy/scipy/issues/7112 Closes: https://bugs.gentoo.org/614464 Package-Manager: Portage-2.3.79, Repoman-2.3.18 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
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Michał Górny · gentoo
*/*: Clean PYTHON_COMPAT of obsolete impls
Closes: https://github.com/gentoo/gentoo/pull/14246 Signed-off-by: Michał Górny <mgorny@gentoo.org>
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David Seifert · gentoo
sci-libs/scipy: Remove old
Closes: https://github.com/gentoo/gentoo/pull/14188 Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
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David Seifert · gentoo
sci-libs/scipy: Remove $(usex python_targets_python3_5)
Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org> Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Jason Zaman · gentoo
sci-libs/scipy: bump 1.4.1
Package-Manager: Portage-2.3.79, Repoman-2.3.16 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
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Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Matthew Thode · gentoo
sci-libs/scipy: 1.1.0 allarches stablized
Stablized for Openstack Stein Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Matthew Thode <prometheanfire@gentoo.org>
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Michał Górny · gentoo
*/*: Remove python3_4 PYTHON_COMPAT correctly
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Matthew Thode · gentoo
sci-libs/scipy: add py37 support
Package-Manager: Portage-2.3.51, Repoman-2.3.12 Signed-off-by: Matthew Thode <prometheanfire@gentoo.org>
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Pacho Ramos · gentoo
sci-libs/scipy: Parallel build fails (#614464)
Package-Manager: Portage-2.3.41, Repoman-2.3.9
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Alexey Shvetsov · gentoo
sci-libs/scipy: Version bump
Package-Manager: Portage-2.3.40, Repoman-2.3.9
Thomas Deutschmann · gentoo
sci-libs/scipy: x86 stable (bug #645152)
Package-Manager: Portage-2.3.36, Repoman-2.3.9
Sergei Trofimovich · gentoo
sci-libs/scipy: stable 0.19.1 for ppc64, bug #645152
Package-Manager: Portage-2.3.26, Repoman-2.3.7 RepoMan-Options: --include-arches="ppc64"
Sergei Trofimovich · gentoo
sci-libs/scipy: stable 0.19.1 for ppc, bug #645152
Package-Manager: Portage-2.3.26, Repoman-2.3.7 RepoMan-Options: --include-arches="ppc"
Agostino Sarubbo · gentoo
sci-libs/scipy: amd64 stable wrt bug #645152
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> Package-Manager: Portage-2.3.19, Repoman-2.3.6 RepoMan-Options: --include-arches="amd64"
Marek Szuba · gentoo
sci-libs/scipy: bump to 1.0.0
Package-Manager: Portage-2.3.13, Repoman-2.3.3
Sébastien Fabbro · gentoo
sci-libs/scipy: setuptools version needs to be at least 36.
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Sébastien Fabbro · gentoo
sci-libs/scipy: version bump
Package-Manager: Portage-2.3.6, Repoman-2.3.2
Justin Lecher · gentoo
sci-libs/scipy: Bump to EAPI 6
Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Drop old
Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
David Seifert · gentoo
sci-libs/scipy: Do not glob on DISTDIR
Bug: https://bugs.gentoo.org/show_bug.cgi?id=612920 Package-Manager: Portage-2.3.5, Repoman-2.3.2
Zac Medico · gentoo
sci-libs/scipy: Add python3_6 to PYTHON_COMPAT
Package-Manager: Portage-2.3.4, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Michał Górny · gentoo
global: Drop dead implementations from PYTHON_COMPAT
David Seifert · gentoo
sci-libs/scipy: Version bump to 0.18.1
Package-Manager: portage-2.3.1
Agostino Sarubbo · gentoo
sci-libs/scipy: ppc64 stable wrt bug #572912
Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/scipy: ppc stable wrt bug #572912
Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Agostino Sarubbo · gentoo
sci-libs/scipy: x86 stable wrt bug #572912
Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Build sequential if python3.5 is involved
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=573148 Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/jasom/add-mongrel2'
This passes minimum requirements. Users jasom and Coacher will further work and improve the ebuild shortly Pull request: https://github.com/gentoo/gentoo/pull/737
Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/jasom/master'
Pull request: https://github.com/gentoo/gentoo/pull/725
Agostino Sarubbo · gentoo
sci-libs/scipy: amd64 stable wrt bug #572912
Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Propargate changes to live ebuild
Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Version Bump
Package-Manager: portage-2.2.27 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Depend on threading support in python
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
Convert from virtual/python-imaging to plain dev-python/pillow
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Correct tests to not fail on warning
Github: scipy/scipy#5426 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Revert addition of non existing patch
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Add live ebuild for testing
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Backport fix for glibc-2.22
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Version Bump
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/scipy: Add python3.5 support
Still exhibits harmless test failures Github: scipy/scipy#5298 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed