sci-libs / shogun

Large Scale Machine Learning Toolbox

Official package sites : http://shogun-toolbox.org/ ·

SHOGUN - is a new machine learning toolbox with focus on large scale kernel methods and especially on Support Vector Machines (SVM) with focus to bioinformatics. It provides a generic SVM object interfacing to several different SVM implementations. Each of the SVMs can be combined with a variety of the many kernels implemented. It can deal with weighted linear combination of a number of sub-kernels, each of which not necessarily working on the same domain, where an optimal sub-kernel weighting can be learned using Multiple Kernel Learning. Apart from SVM 2-class classification and regression problems, a number of linear methods like Linear Discriminant Analysis (LDA), Linear Programming Machine (LPM), (Kernel) Perceptrons and also algorithms to train hidden markov models are implemented. The input feature-objects can be dense, sparse or strings and of type int/short/double/char and can be converted into different feature types. Chains of preprocessors (e.g. substracting the mean) can be attached to each feature object allowing for on-the-fly pre-processing.

v5.0.0 :: 0/16 :: gentoo

Modified
License
GPL-3 free-noncomm
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
R doc examples lua octave opencl python ruby static-libs test

General

R
Missing description
doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
examples
Install examples, usually source code
lua
Enable Lua scripting support
octave
Missing description
opencl
Missing description
python
Add optional support/bindings for the Python language
ruby
Add support/bindings for the Ruby language
static-libs
Build static versions of dynamic libraries as well
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

cpu_flags_x86

sse
Use the SSE instruction set

python_single_target

python2_7
Build for Python 2.7 only
python3_5
Build for Python 3.5 only
python3_6
Build for Python 3.6 only

python_targets

python2_7
Build with Python 2.7
python3_5
Build with Python 3.5
python3_6
Build with Python 3.6

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

app-arch / gzip : Standard GNU compressor

app-arch / lzma : LZMA Stream Compressor from the SDK

app-arch / snappy : A high-speed compression/decompression library by Google

app-doc / doxygen : Documentation system for most programming languages

dev-cpp / eigen : C++ template library for linear algebra

dev-cpp / gtest : Google C++ Testing Framework

dev-lang / R : Language and environment for statistical computing and graphics

dev-lang / lua : A powerful light-weight programming language designed for extending applications

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-lang / swig : Simplified Wrapper and Interface Generator

dev-libs / json-c : A JSON implementation in C

dev-libs / libxml2 : XML C parser and toolkit

dev-libs / lzo : An extremely fast compression and decompression library

dev-libs / protobuf : Google's Protocol Buffers - Extensible mechanism for serializing structured data

dev-python / jinja : A full-featured template engine for Python

dev-python / numpy : Fast array and numerical python library

dev-python / sphinx : Python documentation generator

dev-ruby / narray : Numerical N-dimensional Array class

dev-util / cmake : Cross platform Make

net-misc / curl : A Client that groks URLs

sci-libs / arpack : Arnoldi package library to solve large scale eigenvalue problems

sci-libs / arprec : Arbitrary precision float arithmetics and functions

sci-libs / colpack : C++ algorithms for specialized vertex coloring problems

sci-libs / hdf5 : General purpose library and file format for storing scientific data

sci-libs / nlopt : Non-linear optimization library

sci-libs / scipy : Scientific algorithms library for Python

sci-mathematics / glpk : GNU Linear Programming Kit

sci-mathematics / lpsolve : Mixed Integer Linear Programming (MILP) solver

sci-mathematics / octave : High-level interactive language for numerical computations

sys-devel / make : Standard tool to compile source trees

sys-libs / readline : Another cute console display library

sys-libs / zlib : Standard (de)compression library

virtual / blas : Virtual for FORTRAN 77 BLAS implementation

virtual / cblas : Virtual for BLAS C implementation

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

virtual / opencl : Virtual for OpenCL implementations

virtual / pkgconfig : Virtual for the pkg-config implementation

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

app-arch / gzip : Standard GNU compressor

app-arch / lzma : LZMA Stream Compressor from the SDK

app-arch / snappy : A high-speed compression/decompression library by Google

dev-cpp / eigen : C++ template library for linear algebra

dev-lang / R : Language and environment for statistical computing and graphics

dev-lang / lua : A powerful light-weight programming language designed for extending applications

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-libs / json-c : A JSON implementation in C

dev-libs / libxml2 : XML C parser and toolkit

dev-libs / lzo : An extremely fast compression and decompression library

dev-libs / protobuf : Google's Protocol Buffers - Extensible mechanism for serializing structured data

dev-python / numpy : Fast array and numerical python library

dev-ruby / narray : Numerical N-dimensional Array class

net-misc / curl : A Client that groks URLs

sci-libs / arpack : Arnoldi package library to solve large scale eigenvalue problems

sci-libs / arprec : Arbitrary precision float arithmetics and functions

sci-libs / colpack : C++ algorithms for specialized vertex coloring problems

sci-libs / hdf5 : General purpose library and file format for storing scientific data

sci-libs / nlopt : Non-linear optimization library

sci-mathematics / glpk : GNU Linear Programming Kit

sci-mathematics / lpsolve : Mixed Integer Linear Programming (MILP) solver

sci-mathematics / octave : High-level interactive language for numerical computations

sys-libs / readline : Another cute console display library

sys-libs / zlib : Standard (de)compression library

virtual / blas : Virtual for FORTRAN 77 BLAS implementation

virtual / cblas : Virtual for BLAS C implementation

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

virtual / opencl : Virtual for OpenCL implementations

641254
sci-libs/shogun-5.0.0: Missing dependency on dev-python/ply
645294
sci-libs/shogun-5.0.0 : /.../NeuralNetworkFileReader.cpp:54:6: error: is_error was not declared in this scope
668598
sci-libs/shogun-5.0.0 : CMake Error at CMakeLists.txt:700 (message):
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
*/*: Remove python3_4 PYTHON_COMPAT correctly
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Pacho Ramos · gentoo
sci-libs/shogun: Support python3.6
Package-Manager: Portage-2.3.40, Repoman-2.3.9
Arfrever Frehtes Taifersar Arahesis · gentoo
sci-libs/shogun: Depend on >=dev-cpp/gtest-1.8.0.
dev-cpp/gmock has been merged into >=dev-cpp/gtest-1.8.0.
David Seifert · gentoo
sci-libs/shogun: [QA] Add missing python metadata variables
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
David Seifert · gentoo
sci-libs/shogun: Version bump to 5.0.0
Gentoo-bug: 550134, 570014, 587324, 593310, 602534, 604670, 606770, 607122 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3782
David Seifert · gentoo
sci-libs/shogun: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3782
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Justin Lecher · gentoo
sci-libs/shogun: Drop old
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-libs/shogun: Backport fix for eigen-3.3
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=604670 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Michał Górny · gentoo
global: Drop dead implementations from PYTHON_COMPAT
David Seifert · gentoo
sci-libs/shogun: Remove extern "C", fix USE="doc" generation
Gentoo-Bug: 582464 Package-Manager: portage-2.3.0_rc1
David Seifert · gentoo
sci-libs/shogun: Clear QA warnings
Package-Manager: portage-2.2.28
David Seifert · gentoo
sci-libs/shogun: Clear QA warnings
Package-Manager: portage-2.2.28
David Seifert · gentoo
sci-libs/shogun: Version bump to latest 4.1.0 release
Package-Manager: portage-2.2.28
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed