{"bugs":[{"bugid":877387,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-libs\/silo-4.11.1-r1 installs libtool files (.la) without corresponding static libraries"},{"bugid":886464,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-libs\/silo-4.11-r1 fails to compile (CLANG-STRICTER-SYSTEM): silo_hdf5.c:1869:13: error: incompatible integer to pointer conversion passing char to parameter of type const char ; take the address with & [-Wint-conversion]"},{"bugid":908484,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-libs\/silo-4.11-r1 fails to compile (MUSL-SYSTEM): H5FDsilo.c:544:5: error: initializer element is not computable at load time"},{"bugid":927189,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-libs\/silo-4.11.1 fails tests"},{"bugid":955270,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-libs\/silo must port to Qt6"}],"categories":[{"categoryid":472,"name":"dev-qt","summary":"The dev-qt category contains packages for the Qt framework modules and directly related libraries and development applications from the upstream Qt Project. Do not add other packages to this category."},{"categoryid":453,"name":"net-dialup","summary":"The net-dialup category contains dialup-related networking software."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"52149d78563e8b5ce4a892b81773ad86afc662c5","committime":"2025-03-30T17:50:20","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Signed-off-by: Andreas Sturmlechner ","commitid":"1a23e3ab7432d8d20c2946df41178fe92eabd2f6","committime":"2025-03-25T21:12:47","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: drop 4.11-r2"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"d747d76137d39e8a8a4c795e648f4acb9229cb3e","committime":"2024-04-23T20:49:05","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"fa904371a72be8025f106ec906c8ebb32db5c065","committime":"2024-04-23T20:30:58","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: add subslot dep on sci-libs\/hdf5"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a0174dd431a69861cb0e7aaed7592baa2be63a3b","committime":"2024-03-17T08:03:59","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"* Partially fix tests with GCC 14 (reported another issue on the upstream PR for that).\n* Disable LTO and SA given the comments on a linked upstream bug wrt opimisation.\n\nCloses: https:\/\/bugs.gentoo.org\/862927\nSigned-off-by: Sam James ","commitid":"563f6de9fc73190ad10ae3778fe3ede11a42f7e3","committime":"2024-03-17T07:48:42","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: add 4.11.1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c9a04060982694325b777ba9fcbf7cba3ca918d1","committime":"2022-10-16T15:18:52","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/851018\nSigned-off-by: Andreas Sturmlechner ","commitid":"2ec5dd82dd63f265822a2e4e37aabc722d1bcac0","committime":"2022-10-16T15:09:25","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: Fix configure w\/o Qt binaries in PATH, drop which usage"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1ec44c486771fda0060b282823814c75f93f36c9","committime":"2022-01-19T21:51:40","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ionen@gentoo.org","authorname":"Ionen Wolkens","body":"Closes: https:\/\/bugs.gentoo.org\/831361\nSigned-off-by: Ionen Wolkens ","commitid":"4e9ea438490364ebbe1bdc6e83b9f7e77c1f26ca","committime":"2022-01-19T21:40:34","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: fix build with minimal QT"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"7eddd32c81519ef1c93c285d03d49144f687c7b7","committime":"2022-01-17T15:21:40","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"marco@scardovi.com","authorname":"Marco Scardovi","body":"Package-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Marco Scardovi \nSigned-off-by: Jakov Smolić ","commitid":"d1edc15ab5b4834c7877176c393cce100ab73b12","committime":"2022-01-16T17:36:42","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: drop old version"},{"authoremail":"marco@scardovi.com","authorname":"Marco Scardovi","body":"See https:\/\/github.com\/LLNL\/Silo\/issues\/236 for test\n\nCloses: https:\/\/bugs.gentoo.org\/656432\nCloses: https:\/\/bugs.gentoo.org\/718702\nCloses: https:\/\/bugs.gentoo.org\/741741\n\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Marco Scardovi \nSigned-off-by: Jakov Smolić ","commitid":"b94b2e74ac6995dd71878af8a21959dcd8e86818","committime":"2022-01-15T20:10:03","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: revbump to -r1 and add test again"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"ccf297db9712bc0c23b4b5014069d5ca6eab16b3","committime":"2022-01-05T20:06:54","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"marco@scardovi.com","authorname":"Marco Scardovi","body":"Package-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Marco Scardovi \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/23306\nSigned-off-by: Jakov Smolić ","commitid":"44e57bc925163850d4082643525277cc66dca69d","committime":"2021-12-27T20:31:51","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: drop old version"},{"authoremail":"marco@scardovi.com","authorname":"Marco Scardovi","body":"I have restricted test because it's broken right now in 4.11\n(there's a problem about mismatch in a fortran file, matf77.f).\n\nFollowing the archlinux way I've moved to the BSD version in\norder to use only BSD license (the full version requires some\nnon-free licenses and We don't really need to complain against them).\n\nThis PR also bump to latest EAPI (see bug below)\nand add USE flag browser for browser support\n\nCloses: https:\/\/bugs.gentoo.org\/828693\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Marco Scardovi \nSigned-off-by: Jakov Smolić ","commitid":"b7fbed581008c7f7e6c6e16028341b60862cd002","committime":"2021-12-14T22:01:46","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: bump to 4.11 and EAPI 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1dff16feef2bb9d2ccf6e0e5f2a4f87e02f7a94d","committime":"2021-04-18T06:22:06","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2\nSigned-off-by: Sam James ","commitid":"582b2475b3bde9880c52e424fba1c7d11f89dfa5","committime":"2021-04-16T13:59:21","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: eutils->epatch"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fef742528aacdd4ffa4e59ea0354106ca161650e","committime":"2019-12-10T23:48:11","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"The result was achieved via the following pipeline:\n\n pkgcheck scan -c RestrictTestCheck -R FormatReporter \\\n --format '{category}\/{package}\/{package}-{version}.ebuild' |\n xargs -n32 grep -L RESTRICT |\n xargs -n32 sed -i -e '\/^IUSE=.*test\/aRESTRICT=\"!test? ( test )\"'\n\nThe resulting metadata was compared before and after the change.\nFew Go ebuilds had to be fixed manually due to implicit RESTRICT=strip\nadded by the eclass. Two ebuilds have to be fixed because of multiline\nIUSE.\n\nSuggested-by: Robin H. Johnson \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/13942\nSigned-off-by: Michał Górny ","commitid":"064af661d0c9a31cecdf348632bc5603333a9149","committime":"2019-12-10T22:02:54","packageid":62412,"repoid":1,"summary":"*\/*: [QA] Fix trivial cases of MissingTestRestrict"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"9a6d42e02b07fd70da1ec6540c43d51116d3388a","committime":"2018-08-15T10:44:04","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-2.3.46, Repoman-2.3.10","commitid":"76d9f3bdb7554ddef74e656d26774ac2ccffec40","committime":"2018-08-15T09:49:42","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: QA: Fix REQUIRED_USE"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"ff7be25e56c907c82a54fe02648eeead13e1523c","committime":"2018-03-13T09:47:07","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/645434\nPackage-Manager: Portage-2.3.24, Repoman-2.3.6","commitid":"7d9eacdfc758857f89923f5b57e9f1b795186dd4","committime":"2018-03-12T19:50:29","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: Drop old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"4956cd0da7cee1c91f7468bc7a010f92abba1fcd","committime":"2018-01-24T10:29:47","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"slis@gentoo.org","authorname":"Slawomir Lis","body":"As there is no recent version available upstream, I've created\na patch to build with qt5.\n\nReported-In: https:\/\/bugs.gentoo.org\/645434\nPackage-Manager: Portage-2.3.20, Repoman-2.3.6","commitid":"8b1b556348dd386b205af3359510a169091f8c6b","committime":"2018-01-24T10:12:43","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: created patches to build with qt5"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"119c3a7d3725f9e4c452ccf69ecc79bbfbdba5be","committime":"2017-07-28T07:09:17","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"slis@gentoo.org","authorname":"Slawomir Lis","body":"Bug reported: 625794\n\nReported-by: deference@null.net\nPackage-Manager: Portage-2.3.6, Repoman-2.3.3","commitid":"aef8cfc47a055dcaba51f431a4580256beb262b1","committime":"2017-07-28T07:01:11","packageid":62412,"repoid":1,"summary":"sci-libs\/silo: added patch to fix hdf5 mpi compile problem"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":62412,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e7072d8af626a801b93fd845a952ede6c0538a33","committime":"2015-09-24T05:21:46","packageid":62412,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"slis@gentoo.org","authorname":"Sławomir Lis","body":"Package-Manager: portage-2.2.20.1","commitid":"600f1fe8b157ef839737dab90547e494dd8de21b","committime":"2015-09-24T05:11:28","packageid":62412,"repoid":1,"summary":"added fortran compiler check (#561136)"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":62412,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":62412,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":62412,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":318,"description":"General purpose library and file format for storing scientific data","ebuildids":[824085],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"xarthisius@gentoo.org","maintainername":"Kacper Kowalik","name":"hdf5","packageid":42259,"summary":"HDF5 is a file format and library for storing scientific data. HDF5 was designed and implemented to address the deficiencies of HDF4.x. It has a more powerful and flexible data model, supports files larger than 2 GB, and supports parallel I\/O."},{"block":false,"categoryid":453,"description":"Communication package providing the X, Y, and ZMODEM file transfer protocols","ebuildids":[824085],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"embedded@gentoo.org","maintainername":"Embedded Gentoo","name":"lrzsz","packageid":45670},{"block":false,"categoryid":396,"description":"Virtual for Fortran Compiler","ebuildids":[824085],"firstseen":"2011-04-15T18:23:49.887464","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fortran","packageid":57236},{"block":false,"categoryid":472,"description":"Cross-platform application development framework","ebuildids":[824085],"firstseen":"2013-03-03T14:38:59.202869","maintainer":"qt@gentoo.org","maintainername":"Gentoo Qt Project","name":"qtcore","packageid":60434},{"block":false,"categoryid":472,"description":"The GUI module and platform plugins for the Qt5 framework","ebuildids":[824085],"firstseen":"2013-03-03T14:38:59.202869","maintainer":"qt@gentoo.org","maintainername":"Gentoo Qt Project","name":"qtgui","packageid":60438},{"block":false,"categoryid":472,"description":"Set of components for creating classic desktop-style UIs for the Qt5 framework","ebuildids":[824085],"firstseen":"2014-09-11T13:37:39.656424","maintainer":"qt@gentoo.org","maintainername":"Gentoo Qt Project","name":"qtwidgets","packageid":62526},{"block":false,"categoryid":396,"description":"Virtual for szip compression drop-in replacements","ebuildids":[824085],"firstseen":"2016-03-19T14:41:34.095936","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"szip","packageid":65180}],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":824085,"firstseen":"2024-04-23T22:09:13.434250","license":"BSD","moddate":"2025-07-14T19:17:07","packageid":62412,"repoid":1,"slot":"0","uses":["browser","hdf5","silex"],"version":"4.11.1-r1"}],"masks":[],"package":{"categoryid":318,"description":"A mesh and field I\/O library and scientific database","firstseen":"2014-07-24T13:39:06.969892","maintainer":"slis@gentoo.org","maintainername":"Gentoo Cluster Project","name":"silo","packageid":62412,"summary":"Silo is a library for reading and writing a wide variety of scientific data to binary, disk files. The files Silo produces and the data within them can be easily shared and exchanged between wholly independently developed applications running on disparate computing platforms."},"rdependencies":[{"block":false,"categoryid":318,"description":"General purpose library and file format for storing scientific data","ebuildids":[824085],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"xarthisius@gentoo.org","maintainername":"Kacper Kowalik","name":"hdf5","packageid":42259,"summary":"HDF5 is a file format and library for storing scientific data. HDF5 was designed and implemented to address the deficiencies of HDF4.x. It has a more powerful and flexible data model, supports files larger than 2 GB, and supports parallel I\/O."},{"block":false,"categoryid":453,"description":"Communication package providing the X, Y, and ZMODEM file transfer protocols","ebuildids":[824085],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"embedded@gentoo.org","maintainername":"Embedded Gentoo","name":"lrzsz","packageid":45670},{"block":false,"categoryid":396,"description":"Virtual for Fortran Compiler","ebuildids":[824085],"firstseen":"2011-04-15T18:23:49.887464","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fortran","packageid":57236},{"block":false,"categoryid":472,"description":"Cross-platform application development framework","ebuildids":[824085],"firstseen":"2013-03-03T14:38:59.202869","maintainer":"qt@gentoo.org","maintainername":"Gentoo Qt Project","name":"qtcore","packageid":60434},{"block":false,"categoryid":472,"description":"The GUI module and platform plugins for the Qt5 framework","ebuildids":[824085],"firstseen":"2013-03-03T14:38:59.202869","maintainer":"qt@gentoo.org","maintainername":"Gentoo Qt Project","name":"qtgui","packageid":60438},{"block":false,"categoryid":472,"description":"Set of components for creating classic desktop-style UIs for the Qt5 framework","ebuildids":[824085],"firstseen":"2014-09-11T13:37:39.656424","maintainer":"qt@gentoo.org","maintainername":"Gentoo Qt Project","name":"qtwidgets","packageid":62526},{"block":false,"categoryid":396,"description":"Virtual for szip compression drop-in replacements","ebuildids":[824085],"firstseen":"2016-03-19T14:41:34.095936","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"szip","packageid":65180}],"repos":[{"branch":"master","lastcommit":"0aeb43d97421f1e50abc7c145dee6827ae57d532","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/software.llnl.gov\/Silo\/"],"uses":[{"description":"Enable browser support","isdefault":false,"packageid":62412,"use":"browser"},{"defaultflag":true,"description":"Add support for the Hierarchical Data Format v5","isdefault":true,"use":"hdf5"},{"defaultflag":true,"description":"Build silex data browser","isdefault":true,"packageid":62412,"use":"silex"}]}