{"bugs":[{"bugid":829502,"firstseen":"2025-07-11T02:48:40.189262","severity":"enhancement","status":"CONFIRMED","summary":"sci-libs\/suitesparse to 5.10.1 (and related) version bump request (5.4.0 is blocking cleanup of sci-libs\/cholmod-3.0.13)"},{"bugid":921100,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"sci-libs\/suitesparse does not packages RBio"}],"categories":[{"categoryid":375,"name":"games-strategy","summary":"The games-strategy category contains strategy games."},{"categoryid":438,"name":"media-libs","summary":"The media-libs category contains media-related libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository 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","commitid":"8ff4801bd56bda9b570532e113a939526b80f34f","committime":"2023-06-03T14:53:43","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"092389c05657d5fec42b011e6a939decd4ad9d51","committime":"2023-06-03T11:31:50","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"a97e86ab6e15a39791ef8383198a6d6fda3c0711","committime":"2023-06-02T16:12:56","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: destabilize for ~ppc"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c844f80c426df4a64ef7f934dea6226ef4d57cf6","committime":"2022-11-19T11:46:45","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mmk@levelnine.at","authorname":"Michael Mair-Keimberger","body":"Signed-off-by: Michael Mair-Keimberger \nSigned-off-by: Andrew Ammerlaan ","commitid":"380bdc653029378877e04ac2d5d0a46c566c7ae6","committime":"2022-11-19T09:17:07","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: use HTTPS"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"cd778209fe9cf874d64192e1e16f465f9f964708","committime":"2021-06-08T17:05:08","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"eike@sf-mail.de","authorname":"Rolf Eike Beer","body":"Package-Manager: Portage-3.0.18, Repoman-3.0.2\nRepoMan-Options: --include-arches=\"hppa\"\nSigned-off-by: Rolf Eike Beer \nSigned-off-by: Sergei Trofimovich ","commitid":"29b2ee5d6fb7b6b94f023d2ab3bd290c9798d700","committime":"2021-06-08T15:24:50","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: keyworded 5.4.0 for hppa, bug #716982"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"bc2104e863341bfea7bbf534a7d4c420d02cf69f","committime":"2020-07-21T10:35:13","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3604b1261a830796476a43720d54cd03ac99ca57","committime":"2020-07-19T16:35:44","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-3.0.0, Repoman-2.3.23\nSigned-off-by: Andreas Sturmlechner ","commitid":"e95a1e2cf7b35ff78fa7ef380bdf262cd0ac0f0e","committime":"2020-07-19T16:18:09","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: Drop 4.0.2 and 4.1.2"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-2.3.103, Repoman-2.3.23\nSigned-off-by: Sam James ","commitid":"ae194dafde1cf9274c670cc2161fb8c307fddd23","committime":"2020-07-19T15:58:27","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: x86 stable (bug #716960)"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"54961c51c640a9dfb7c1d4671c16b4d7f082ca9f","committime":"2020-06-22T19:35:09","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c8c902ec527d8bfe19ce19ae6e36f05b5673057d","committime":"2020-06-22T07:05:15","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nRepoMan-Options: --include-arches=\"amd64\"\nSigned-off-by: Agostino Sarubbo ","commitid":"892704042ef40c26a1b4ffaaf1e7aa4b31b6c6ef","committime":"2020-06-22T06:56:42","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: amd64 stable wrt bug #716960"},{"authoremail":"sam@cmpct.info","authorname":"Sam James (sam_c)","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nSigned-off-by: Sam James (sam_c) \nSigned-off-by: Mart Raudsepp ","commitid":"480967d842c14b00c91a351fa4425597f81e22f9","committime":"2020-06-22T02:53:29","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: arm64 stable (bug #716960)"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"7d54e46663927b4e592d7193522fb798c3e20d75","committime":"2020-06-21T17:35:06","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nRepoMan-Options: --include-arches=\"ppc64\"\nSigned-off-by: Agostino Sarubbo ","commitid":"dc0ee833d73b29e9f8a3dc06d3e7c42acf05dc8d","committime":"2020-06-21T17:08:27","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: ppc64 stable wrt bug #716960"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nRepoMan-Options: --include-arches=\"ppc\"\nSigned-off-by: Agostino Sarubbo ","commitid":"18e27fb491ead468a440310d28587b85d2311f1b","committime":"2020-06-21T17:02:58","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: ppc stable wrt bug #716960"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5dc927b3ad03eeccba945359928e130cb4ec466a","committime":"2020-06-02T22:36:05","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@cmpct.info","authorname":"Sam James (sam_c)","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nSigned-off-by: Sam James (sam_c) \nSigned-off-by: Mart Raudsepp ","commitid":"d035cd72a6f0a356aaf2618dbe3751366b495031","committime":"2020-06-01T16:43:08","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: arm64 keyworded (bug #716982)"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0de8a5061868f120666adba1c3d52c8dbb6ee958","committime":"2020-05-15T18:05:12","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"eike@sf-mail.de","authorname":"Rolf Eike Beer","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nRepoMan-Options: --include-arches=\"sparc\"\nSigned-off-by: Rolf Eike Beer \nSigned-off-by: Sergei Trofimovich ","commitid":"89c0b190d71fa6e0b1ec56f995e9031401e26d9d","committime":"2020-05-15T16:53:10","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: keyworded 5.4.0 for sparc, bug #716982"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"68ec63b218364227727ff242995a354b8af4804e","committime":"2020-05-06T07:06:50","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"slyfox@gentoo.org","authorname":"Sergei Trofimovich","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nRepoMan-Options: --include-arches=\"ppc64\"\nSigned-off-by: Sergei Trofimovich ","commitid":"c84fe1074fd8113d073de61c9d385b78140afc8e","committime":"2020-05-06T06:45:45","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: keyworded 5.4.0 for ppc64, bug #716982"},{"authoremail":"slyfox@gentoo.org","authorname":"Sergei Trofimovich","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nRepoMan-Options: --include-arches=\"ppc\"\nSigned-off-by: Sergei Trofimovich ","commitid":"b661151bf813caba245fb50c869843c7b4a00376","committime":"2020-05-06T06:39:10","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: keyworded 5.4.0 for ppc, bug #716982"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"177cc46b5b9f6164e8422edf0ce4fc9f817f9402","committime":"2020-04-04T14:36:19","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mjo@gentoo.org","authorname":"Michael Orlitzky","body":"All of the individual suitesparse components have been updated, but I\ndidn't realize there was a metapackage. And the 4.x versions of the\nmetapackage have incorrect dependencies that are trying to pull in the\ncomponents that belong to suitesparse-5.4.0. This is producing some\nconfusing errors. This commit adds a new version of the metapackage\nwith correct dependencies (tied to the versions of the components that\nship with suitesparse-5.4.0), and should let ~arch users upgrade\neverything after switching from USE=metis to USE=partition. At some\nlater point, we can prune the 4.x metapackage and components and be\ndont with that.\n\nBug: https:\/\/bugs.gentoo.org\/711610\nPackage-Manager: Portage-2.3.89, Repoman-2.3.20\nSigned-off-by: Michael Orlitzky ","commitid":"030d616e0dbb91f18a34fdb6c5cb72024b33915f","committime":"2020-04-04T13:41:54","packageid":42578,"repoid":1,"summary":"sci-libs\/suitesparse: new version 5.4.0."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":42578,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":42578,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":42578,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":42578,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":42578,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[{"block":false,"categoryid":375,"description":"2D space trading and combat game, in a similar vein to Escape Velocity","ebuildids":[889463,889463,894187,894187],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"games@gentoo.org","maintainername":"Gentoo Games Project","name":"naev","packageid":51599},{"block":false,"categoryid":438,"description":"Helmut Dersch's panorama toolbox library","ebuildids":[800199,800199,864636,864636,880025,880025],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"graphics@gentoo.org","maintainername":"Gentoo Graphics Project","name":"libpano13","packageid":54072},{"block":false,"categoryid":353,"description":"Eukaryotic gene predictor","ebuildids":[777090,777090,853615,853615],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"augustus","packageid":54585}],"ebuilds":[{"archs":["amd64","arm64","ppc64","~hppa","~ppc","~sparc","~x86"],"ebuildid":671587,"firstseen":"2020-04-04T15:57:15.729515","license":"metapackage","moddate":"2025-12-19T10:14:54","packageid":42578,"repoid":1,"slot":"0","uses":["cuda","doc","lapack","partition","tbb"],"version":"5.4.0"}],"masks":[],"package":{"categoryid":318,"description":"Metapackage for a suite of sparse matrix tools","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"suitesparse","packageid":42578,"summary":"SuiteSparse is a suite of sparse matrix libraries from University of Florida Computer Science Department. Currently, this includes: * AMD: symmetric approximate minimum degree * BTF: permutation to block triangular form * CAMD: symmetric approximate minimum degree * CCOLAMD: constrained column approximate minimum degree * COLAMD: column approximate minimum degree * CHOLMOD: sparse supernodal Cholesky factorization and update\/downdate * CSparse: a concise sparse matrix package * CXSparse: an extended version of CSparse * KLU: sparse LU factorization, for circuit simulation * LDL: a simple LDL^T factorization * SPQR: multifrontal sparse QT factorization * UMFPACK: sparse multifrontal LU factorization * SuiteSparse_config: common configuration for all but CSparse The Gentoo package does not include the suitesparse MATLAB tools from upstream, from the packages above and the following MATLAB-only packages: * RBio: MATLAB toolbox for reading\/writing sparse matrices * LINFACTOR: solve Ax=b using LU or CHOL * MESHND: 2D and 3D mesh generation and nested dissection * SSMULT: sparse matrix times sparse matrix"},"rdependencies":[{"block":false,"categoryid":318,"description":"Library to order a sparse matrix prior to Cholesky factorization","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"amd","packageid":42168,"summary":"AMD is a set of routines for ordering a sparse matrix prior to Cholesky factorization (or for LU factorization with diagonal pivoting). There are versions in both C and Fortran."},{"block":false,"categoryid":318,"description":"Sparse LU factorization for circuit simulation","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"klu","packageid":43936,"summary":"KLU is a sparse LU factorization algorithm well-suited for use in circuit simulation. It is also part of the University of Florida sparse matrix suite."},{"block":false,"categoryid":318,"description":"Column approximate minimum degree ordering algorithm","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"colamd","packageid":46628,"summary":"The COLumn Approximate Minimum Degree ordering algorithm computes a permutation vector P such that the LU factorization of A (:,P) tends to be sparser than that of A. The Cholesky factorization of (A (:,P))\\'*(A (:,P)) will also tend to be sparser than that of A\\'*A. SYMAMD is a symmetric minimum degree ordering method based on COLAMD, available as a MATLAB-callable function. It constructs a matrix M such that M\\'*M has the same pattern as A, and then uses COLAMD to compute a column ordering of M."},{"block":false,"categoryid":318,"description":"Algorithm for matrix permutation into block triangular form","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"btf","packageid":47580,"summary":"The Block Triangular Form is a library of routines offering permutation of an unsymmetric matrix (square or rectangular) into its block upper triangular form (more precisely, it computes a Dulmage-Mendelsohn decomposition)."},{"block":false,"categoryid":318,"description":"Sparse Cholesky factorization and update\/downdate library","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"cholmod","packageid":47950},{"block":false,"categoryid":318,"description":"Extended sparse matrix package","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"cxsparse","packageid":48965,"summary":"CXSparse is an extended version of CSparse, a sparse matrix package, with support for double or complex matrices, with int or long integers."},{"block":false,"categoryid":318,"description":"Library to order a sparse matrix prior to Cholesky factorization","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"camd","packageid":49083,"summary":"Constrained Approximate Minimum Degree ordering is a set of routines for ordering a sparse matrix prior to Cholesky factorization (or for LU factorization with diagonal pivoting)."},{"block":false,"categoryid":318,"description":"Unsymmetric multifrontal sparse LU factorization library","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"umfpack","packageid":50683,"summary":"UMFPACK is a set of routines for solving unsymmetric sparse linear systems, Ax=b, using the Unsymmetric MultiFrontal method. Includes a C-callable interface, and a Fortran-callable interface. MATLAB routines are not included in the Gentoo package."},{"block":false,"categoryid":318,"description":"Multithreaded multifrontal sparse QR factorization library","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"spqr","packageid":52710,"summary":"SuiteSparseQR is an implementation of the multifrontal sparse QR factorization method. Parallelism is exploited both in the BLAS and across different frontal matrices using Intel's Threading Building Blocks. It can obtain a substantial fraction of the theoretical peak performance of a multicore computer."},{"block":false,"categoryid":318,"description":"Simple but educational LDL^T matrix factorization algorithm","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"ldl","packageid":53778,"summary":"LDL is a set of concise routines for factorizing symmetric positive-definite sparse matrices, with some applicability to symmetric indefinite matrices. Its primary purpose is to illustrate much of the basic theory of sparse matrix algorithms in as concise a code as possible, including an elegant new method of sparse symmetric factorization that computes the factorization row-by-row but stores it column-by-column. The entire symbolic and numeric factorization consists of a total of only 49 lines of code. The package is written in C, and includes a MATLAB interface."},{"block":false,"categoryid":318,"description":"Constrained Column approximate minimum degree ordering algorithm","ebuildids":[671587],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"ccolamd","packageid":54582,"summary":"Constrained COLAMD computes an column approximate minimum degree ordering algorithm, (like COLAMD), but it can also be given a set of ordering constraints."},{"block":false,"categoryid":318,"description":"Common configurations for all packages in suitesparse","ebuildids":[671587],"firstseen":"2012-11-12T14:40:08.142846","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"suitesparseconfig","packageid":59991,"summary":"SuiteSparse_config is a set of configuration files for the SuiteSparse matrix libraries from CISE at University of Florida. It contains some headers and makefiles."}],"repos":[{"branch":"master","lastcommit":"d7d651a3f16a89ff2e0067af3dec9c6eecc0ca6b","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/people.engr.tamu.edu\/davis\/suitesparse.html"],"uses":[{"description":"Enable NVIDIA CUDA support (computation on GPU)","isdefault":false,"use":"cuda"},{"description":"Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally","isdefault":false,"use":"doc"},{"description":"Add support for the virtual\/lapack numerical library","isdefault":false,"use":"lapack"},{"description":"Enable graph partitioning and graph-partition-based orderings through sci-libs\/metis or sci-libs\/parmetis","isdefault":false,"packageid":42578,"use":"partition"},{"description":"Enable multithreading with the Intel Threads Building Block dev-cpp\/tbb","isdefault":false,"packageid":42578,"use":"tbb"}]}