{"bugs":[{"bugid":741592,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-misc\/nco-4.5.1-r2 fails to compile: nco_omp.c:210:53: error: variable 'fp_stderr' must have explicitly specified"}],"categories":[{"categoryid":429,"name":"dev-cpp","summary":"The dev-cpp category contains libraries and utilities relevant to the c++ programming language."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."},{"categoryid":424,"name":"sci-misc","summary":"The sci-misc category contains various miscellaneous science applications which do not fit any other sci-* category."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen <grobian@gentoo.org>","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":43624,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"29c8fb96556f9a4e6fc8a9749cc49cb52e724a7c","committime":"2023-08-26T14:16:32","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>","commitid":"08d64121efe6762e5c867b8d536cc9feafbaaeb8","committime":"2023-08-26T14:05:18","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: drop 4.5.1-r3"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>","commitid":"c4143fff4e80a6442b13b3a8570d08d7a4fe51c4","committime":"2023-06-03T14:55:56","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"88f1f420b6ed8579882f294cf756b41c682b78c2","committime":"2023-03-15T06:01:57","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Tools are now always available.\n\nSigned-off-by: Sam James <sam@gentoo.org>","commitid":"76309dd0c59bc1cc6542f4357b17b473cf575e17","committime":"2023-03-15T05:48:17","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: update netcdf[tools] dep"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5088d6fd40276f3a5ac47083ab1e53e68451a45f","committime":"2023-03-04T09:31:55","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>","commitid":"7e1dfc3005fc851cb2e1501e7d9ee5673339b8a7","committime":"2023-03-04T09:16:02","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: Stabilize 5.1.3 amd64, #899440"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>","commitid":"941048e698196d7b95f75898fef9c6155acf8ee7","committime":"2023-03-04T09:16:01","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: Stabilize 5.1.3 x86, #899440"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"124cba68f2377201e93126f827d2d67649364410","committime":"2022-12-26T15:18:03","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/888519\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"8659242edb4678314edd834464e75d0eb7558389","committime":"2022-12-26T15:05:06","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: mask useless automake test results"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"b920f1c4ac17f470346684e68f69f1accde66292","committime":"2022-12-26T13:03:04","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/741592\nSigned-off-by: David Seifert <soap@gentoo.org>","commitid":"1fe9f9fa888635a70d5dc68de2c8063ed1b29ca7","committime":"2022-12-26T12:52:16","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: add 5.1.3"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fef742528aacdd4ffa4e59ea0354106ca161650e","committime":"2019-12-10T23:48:11","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"The result was achieved via the following pipeline:\n\n    pkgcheck scan -c RestrictTestCheck -R FormatReporter \\\n      --format '{category}\/{package}\/{package}-{version}.ebuild' |\n    xargs -n32 grep -L RESTRICT |\n    xargs -n32 sed -i -e '\/^IUSE=.*test\/aRESTRICT=\"!test? ( test )\"'\n\nThe resulting metadata was compared before and after the change.\nFew Go ebuilds had to be fixed manually due to implicit RESTRICT=strip\nadded by the eclass.  Two ebuilds have to be fixed because of multiline\nIUSE.\n\nSuggested-by: Robin H. Johnson <robbat2@gentoo.org>\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/13942\nSigned-off-by: Michał Górny <mgorny@gentoo.org>","commitid":"064af661d0c9a31cecdf348632bc5603333a9149","committime":"2019-12-10T22:02:54","packageid":43624,"repoid":1,"summary":"*\/*: [QA] Fix trivial cases of MissingTestRestrict"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"11209fa0d8d1b27494162d10f6a5208267382bfd","committime":"2018-01-01T23:39:05","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"e72e45e4d390cbdcfd2cc67a1746ef0b3756de5a","committime":"2018-01-01T22:40:47","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: Remove old"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"* Remove use of `built_with_use` function\n\nPackage-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"906d6a3933fcfe30c68f701d021d50be5dde48e7","committime":"2018-01-01T22:40:44","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: Port to EAPI 6"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"2080edc474ed2dcc76166081c5a5a3e2772d45a6","committime":"2017-09-12T23:51:58","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mattst88@gentoo.org","authorname":"Matt Turner","commitid":"9962e297a820f0ea96e59f525b080c0018bc0037","committime":"2017-09-12T23:22:26","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: dropped ppc keywords"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"608d56cc6efccab76a8d070e8fd993026258153d","committime":"2017-08-19T00:48:41","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"whissi@gentoo.org","authorname":"Thomas Deutschmann","body":"Package-Manager: Portage-2.3.5, Repoman-2.3.2","commitid":"f6f3678d230203d0916fe3761fd280ec2e10f314","committime":"2017-08-18T23:39:13","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: x86 stable (bugs #607728)"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"0abf50f40f558886e340929fcc8052b7394eb4ef","committime":"2017-07-15T16:53:52","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"klausman@gentoo.org","authorname":"Tobias Klausmann","body":"Gentoo-Bug: 607728","commitid":"6680963dfca0ba9f9faeb73ae294d00baa005504","committime":"2017-07-15T16:22:37","packageid":43624,"repoid":1,"summary":"sci-misc\/nco-4.5.1-r2: add amd64 keyword"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":43624,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"8eecf7c40ff491e83b78bda313d60939e3563084","committime":"2016-01-02T19:41:46","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"chewi@gentoo.org","authorname":"James Le Cuirot","body":"I commented that antlr should have been in RDEPEND before and forgot\nto put antlr-cpp there myself. D'oh!\n\nPackage-Manager: portage-2.2.26","commitid":"632d426b187566345c80409164b9162223dbeb39","committime":"2016-01-02T19:20:59","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: antlr-cpp should be in RDEPEND"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"b7bc59e02726db0cf0f5b21194b9d4f6fa3f9663","committime":"2015-10-14T15:42:47","packageid":43624,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"chewi@gentoo.org","authorname":"James Le Cuirot","body":"Package-Manager: portage-2.2.20.1","commitid":"bdd1e0e47b402bca6dc22c44bc8ee132f53afe85","committime":"2015-10-14T14:47:40","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: Remove old"},{"authoremail":"chewi@gentoo.org","authorname":"James Le Cuirot","body":"The old dependency was wrong anyway because it was missing from\nRDEPEND and didn't include the cxx USE flag.\n\nPackage-Manager: portage-2.2.20.1","commitid":"f90aa9b95704da2cc4969e8008bfbb25cd62d85b","committime":"2015-10-14T14:41:33","packageid":43624,"repoid":1,"summary":"sci-misc\/nco: Use dev-cpp\/antlr-cpp instead of dev-java\/antlr"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":43624,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson <robbat2@gentoo.org>\nX-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts\nX-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":43624,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"489b15338fa1105c6c26e17df9f54627aaedaaf6","committime":"2015-07-31T09:27:47","packageid":43624,"repoid":1,"summary":"2015-07-31 09:27:35 UTC"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":43624,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":318,"description":"The GNU Scientific Library","ebuildids":[781055],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"gsl","packageid":46545,"summary":"The GNU Scientific Library (GSL) is a collection of routines for numerical analysis. The routines are written from scratch by the GSL team in C, and present a modern API for C programmers, while allowing wrappers to be written for very high level languages. GSL includes data types and routines for complex numbers, vectors, matrices, basic linear algebra subroutines (BLAS), eigensystems, simulated annealing, minimization, root finding, pseudo-random numbers, least-squares fitting, fast Fourier transforms (FFT), differential equations, quadrature, Monte Carlo integration, special functions, physical constants, and much more."},{"block":false,"categoryid":318,"description":"Scientific library and interface for array oriented data access","ebuildids":[781055,781055],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"netcdf","packageid":47137,"summary":"NetCDF (network Common Data Form) is an interface for scientific data access and a freely-distributed software library that provides an implementation of the interface. The netCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data."},{"block":false,"categoryid":318,"description":"Library for manipulating units of physical quantities","ebuildids":[781055],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"udunits","packageid":49941,"summary":"This is the Unidata Units library, which supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of unit specifications, and conversion of values between compatible scales of measurement."},{"block":false,"categoryid":429,"description":"The ANTLR 4 C++ Runtime","ebuildids":[781055],"firstseen":"2015-10-15T13:38:57.499515","maintainer":"java@gentoo.org","maintainername":"Java","name":"antlr-cpp","packageid":64526}],"depending":[],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":781055,"firstseen":"2023-03-15T06:11:17.314704","license":"GPL-3","moddate":"2026-03-22T20:20:57","packageid":43624,"repoid":1,"slot":"0\/5.1.3","uses":["dap","gsl","hdf5","ncap2","openmp","test","udunits"],"version":"5.1.3-r1"}],"masks":[],"package":{"categoryid":424,"description":"Command line utilities for operating on netCDF files","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"nco","packageid":43624,"summary":"Command-line operators to analyze netCDF files NetCDF Operator is a suite of programs known as operators. The operators are stand-alone, command-line programs executable in a POSIX shell. Operators take one or more netCDF files as input, perform an operation (e.g., averaging or hyperslabbing), and produce a netCDF output file. NCO was originally designed to manipulate and analyze climate data, though it works on any netCDF format datasets."},"rdependencies":[{"block":false,"categoryid":318,"description":"The GNU Scientific Library","ebuildids":[781055],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"gsl","packageid":46545,"summary":"The GNU Scientific Library (GSL) is a collection of routines for numerical analysis. The routines are written from scratch by the GSL team in C, and present a modern API for C programmers, while allowing wrappers to be written for very high level languages. GSL includes data types and routines for complex numbers, vectors, matrices, basic linear algebra subroutines (BLAS), eigensystems, simulated annealing, minimization, root finding, pseudo-random numbers, least-squares fitting, fast Fourier transforms (FFT), differential equations, quadrature, Monte Carlo integration, special functions, physical constants, and much more."},{"block":false,"categoryid":318,"description":"Scientific library and interface for array oriented data access","ebuildids":[781055],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"netcdf","packageid":47137,"summary":"NetCDF (network Common Data Form) is an interface for scientific data access and a freely-distributed software library that provides an implementation of the interface. The netCDF library also defines a machine-independent format for representing scientific data. Together, the interface, library, and format support the creation, access, and sharing of scientific data."},{"block":false,"categoryid":318,"description":"Library for manipulating units of physical quantities","ebuildids":[781055],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"udunits","packageid":49941,"summary":"This is the Unidata Units library, which supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of unit specifications, and conversion of values between compatible scales of measurement."},{"block":false,"categoryid":429,"description":"The ANTLR 4 C++ Runtime","ebuildids":[781055],"firstseen":"2015-10-15T13:38:57.499515","maintainer":"java@gentoo.org","maintainername":"Java","name":"antlr-cpp","packageid":64526}],"repos":[{"branch":"master","lastcommit":"f87ce2b74421571078063820dc1065e7089c9fa7","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/nco.sourceforge.net\/"],"uses":[{"description":"Support for remote data access with the NETCDF DAP client","isdefault":false,"packageid":43624,"use":"dap"},{"description":"Use the GNU scientific library for calculations","isdefault":false,"use":"gsl"},{"description":"Add support for the Hierarchical Data Format v5","isdefault":false,"use":"hdf5"},{"description":"Build next generation netcdf arithmetic processor (needs dev-java\/antlr)","isdefault":false,"packageid":43624,"use":"ncap2"},{"description":"Build support for the OpenMP (support parallel computing), requires >=sys-devel\/gcc-4.2 built with USE=\"openmp\"","isdefault":false,"use":"openmp"},{"description":"Enable dependencies and\/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)","isdefault":false,"use":"test"},{"description":"Add sci-libs\/udunits files support","isdefault":false,"packageid":43624,"use":"udunits"}]}