{"category":{"categoryid":431,"name":"sci-visualization","summary":"The sci-visualization category contains scientific visualization applications."},"packages":[{"categoryid":431,"description":"Circular layout visualization of genomic and other data","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"circos","packageid":43134,"summary":"Circos visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions. Circos is ideal for creating publication-quality infographics and illustrations with a high data-to-ink ratio, richly layered data and pleasant symmetries. You have fine control each element in the figure to tailor its focus points and detail to your audience."},{"categoryid":431,"description":"Python framework for building ML & data science web apps","firstseen":"2021-05-12T21:48:32.863402","name":"dash","packageid":72877,"summary":"Dash is a productive Python framework for building web analytic applications. Written on top of Flask, Plotly.js, and React.js, Dash is ideal for building data visualization apps with highly custom user interfaces in pure Python. It's particularly suited for anyone who works with data in Python. Through a couple of simple patterns, Dash abstracts away all of the technologies and protocols that are required to build an interactive web-based application. Dash is simple enough that you can bind a user interface around your Python code in an afternoon. Dash apps are rendered in the web browser. You can deploy your apps to servers and then share them through URLs. Since Dash apps are viewed in the web browser, Dash is inherently cross-platform and mobile ready. Dash ships with supercharged components for interactive user interfaces. A core set of components, written and maintained by the Dash team, is available in the dash-core-components library."},{"categoryid":431,"description":"2- and 3-D plotter for creating images (to be used in LaTeX)","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"epix","packageid":54213,"summary":"ePiX creates mathematically accurate figures, plots, and movies using easy-to-learn syntax. The output is expressly suitable for use with LaTeX; figures may be written in a LaTeX picture environment containing PSTricks, tikz, or eepic macros, or as vector (EPS or PDF) image files. The user interface resembles that of LaTeX: You prepare a human-readable scene description in a text editor, then compile the input file into a picture. use ePiX, however."},{"categoryid":431,"description":"Utility to convert files in xfig format to OpenOffice.org Draw format","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fig2sxd","packageid":43525},{"categoryid":431,"description":"General-purpose nonlinear curve fitting and data analysis","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"fityk","packageid":54527,"summary":"Fityk is a program for nonlinear fitting of analytical functions (especially peak-shaped) to data. It can also be used to display data or to remove baseline from data. It is reported to be used in crystallography, chromatography, photoluminescence, infrared and Raman spectroscopy and other fields. Fityk knows about common peak-shaped functions (Gaussian, Lorentzian, Voigt, Pearson VII, bifurcated Gaussian, EMG, Doniach-Sunjic, etc.) and polynomials. It also supports user-defined functions. Fityk offers a graphical interface (and also command line interface), various optimization methods (standard Marquardt least-squares algorithm, Genetic Algorithms, Nelder-Mead simplex), equality constraints, modeling error of x coordinate of points (eg. zero-shift of instrument), handling series of datasets, automation of common tasks with scripts, and more."},{"categoryid":431,"description":"Tool for extracting data from graphs","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"g3data","packageid":43433,"summary":"g3data is used for extracting data from graphs. In publications graphs are often included, but the actual data is not. g3data makes the extraction process much easier."},{"categoryid":431,"description":"Java Mathematical Graphing System","firstseen":"2012-05-20T14:36:52.709637","maintainer":"java@gentoo.org","maintainername":"Java","name":"gcalc","packageid":59340},{"categoryid":431,"description":"Visualization program for exploring high-dimensional data","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"ggobi","packageid":52357,"summary":"GGobi is an open source visualization program for exploring high-dimensional data. It provides highly dynamic and interactive graphics such as tours, as well as familiar graphics such as the scatterplot, barchart and parallel coordinates plots. Plots are interactive and linked with brushing and identification."},{"categoryid":431,"description":"Graphics Layout Engine","firstseen":"2010-05-04T00:54:45.661860","maintainer":"grozin@gentoo.org","maintainername":"Andrey Grozin","name":"gle","packageid":51777,"summary":"GLE (Graphics Layout Engine) is a high-quality graphics package for scientists, combining a user-friendly scripting language with a full range of facilities for producing publication-quality graphs, diagrams, posters and slides."},{"categoryid":431,"description":"Command-line driven interactive plotting program","firstseen":"2010-05-04T00:54:45.661860","maintainer":"ulm@gentoo.org","maintainername":"Ulrich Müller","name":"gnuplot","packageid":51517,"summary":"Gnuplot is a command-driven interactive function plotting program. It can be used to plot functions and data points in both two- and three-dimensional plots in many different formats. It is designed primarily for the visual display of scientific data."},{"categoryid":431,"description":"Universal framework for cross-platform visualization applications","firstseen":"2020-05-29T13:18:20.629348","name":"gr","packageid":71184},{"categoryid":431,"description":"Motif based XY-plotting tool","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"grace","packageid":44900,"summary":"Grace is a point-and-click tool that allows the user to draw X-Y plots. This is the program formerly known as Xmgr. A few of its features are: user defined scaling, tick marks, labels, symbols, line styles, colors. Polynomial regression, splines, running averages, DFT\/FFT, cross\/auto-correlation. Batch mode for unattended plotting. Hardcopy support for PostScript, FrameMaker and several image formats."},{"categoryid":431,"description":"Framework for Scanning Mode Microscopy data analysis","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"gwyddion","packageid":50420,"summary":"Gwyddion is a modular program for SPM data analysis. Primarily it is supposed to be used for analysis of height fields obtained by means of scanning probe microscopy techniques (AFM, MFM, STM, NSOM), but generally it can be used for any other height field analysis or image analysis."},{"categoryid":431,"description":"Fast real-time large-dataset viewing and plotting tool","firstseen":"2010-09-14T18:10:40.387401","maintainer":"qt@gentoo.org","maintainername":"Gentoo Qt Project","name":"kst","packageid":56280},{"categoryid":431,"description":"Scientific data analysis and visualisation based on KDE Frameworks","firstseen":"2015-04-16T13:40:53.570696","maintainer":"dilfridge@gentoo.org","maintainername":"Andreas K. Huettel","name":"labplot","packageid":63370},{"categoryid":431,"description":"Powerful scientific data visualization application","firstseen":"2010-05-04T00:54:45.661860","maintainer":"tamiko@gentoo.org","maintainername":"Matthias Maier","name":"paraview","packageid":46627},{"categoryid":431,"description":"Scripts to prepare and plot VOACAP propagation predictions","firstseen":"2011-02-06T14:39:29.941591","maintainer":"tomjbe@gentoo.org","maintainername":"Thomas Beierlein","name":"pythonprop","packageid":56818},{"categoryid":431,"description":"A fast interactive 2D plotter","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"quickplot","packageid":46851,"summary":"Quickplot is a fast interactive 2D plotter with infinite zooming, value picking, pipe input, and unlimited plots displayed. Quickplot is meant for looking at your data quickly and of secondary importance is making static pictures of your data. It's a data viewer, not a plot editor. It reads ASCII text and sound files. It has lots of command line options, making it very shell script friendly."},{"categoryid":431,"description":"Application for Scientific Data Analysis and Visualization","firstseen":"2021-05-23T14:21:33.733796","name":"scidavis","packageid":72916,"summary":"SciDAVis is a user-friendly data analysis and visualization program primarily aimed at high-quality plotting of scientific data. It strives to combine an intuitive, easy-to-use graphical user interface with powerful features such as Python scriptability."},{"categoryid":431,"description":"2D and 3D data visualization and analysis program","firstseen":"2010-05-04T00:54:45.661860","maintainer":"dilfridge@gentoo.org","maintainername":"Andreas K. Huettel","name":"spyview","packageid":43993},{"categoryid":431,"description":"Qt scientific plotting package with good Postscript output","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"veusz","packageid":49866,"summary":"A Qt based scientific plotting package written in Python using PyQt. It is designed to produce publication ready Postscript output. It provides a GUI, command line and scripting interface (based on Python) to its plotting facilities."},{"categoryid":431,"description":"Scientific visualization tool","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"xd3d","packageid":47148,"summary":"xd3d is a simple scientific visualization tool designed to be easy to learn. It can plot 2d and 3d meshes, with shadowing, contour plots, vector fields, iso-contour (3d), as well as 3d surfaces z=f(x,y) defined by an algebraic expression or a cloud of points. It generates high quality vector PostScript files for scientific publications and still or animated bitmap images. It includes the graph plotter xgraphic."},{"categoryid":431,"description":"X11 Plotting Utility","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"xgraph","packageid":48886,"summary":"Accepts data files or stdin in a form similar to the unix program graph and displays line graphs, scatter plots, or bar charts on an X11 display. Fully annotated with title, axis numbering and labels, and legend. Zooming with the mouse is supported. Can generate hardcopy output to Postscript printers and HPGL plotters. Output can be directly pasted into idraw (drawtool) for further annotation. Particularly useful in shell scripts."},{"categoryid":431,"description":"Tool for extracting data points from graphs","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"xyscan","packageid":45970,"summary":"xyscan is a tool for scientist in the need to extract data points, i.e. numeric values, from a plot. It allows to scan the plots and extract data points including the size of the error bars (both in x and y). It can handle plots with linear and logarithmic scales."},{"categoryid":431,"description":"Interactive 3D mathematical function viewer","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-mathematics@gentoo.org","maintainername":"Gentoo Mathematics Project","name":"zhu3d","packageid":54333,"summary":"Zhu3D allows you to interactively view and animate mathematical functions, isosurfaces and a further independent parametric system. Numerical solutions of equation systems are found with an adaptive random search. The OpenGL-viewer supports zooming, scaling, rotating and translating as well as filed lightning or surface properties. Special effects are transparency, textures, fog and motion blur."}]}