app-crypt
app-crypt / johntheripper-jumbo : fast password cracker
dev-cpp
dev-cpp / icnc : Intel Concurrent Collections for C++ - Parallelism without the Pain
dev-lang
dev-libs
dev-libs / boost : Boost Libraries for C++
dev-libs / maloc : Minimal Abstraction Layer for Object-oriented C/C++ programs
dev-libs / starpu : Unified runtime system for heterogeneous multicore architectures
dev-python
dev-python / h5py : Simple Python interface to HDF5 files
dev-python / scientificpython : Scientific Module for Python
dev-util
dev-util / nvidia-cuda-sdk : NVIDIA CUDA Software Development Kit
dev-util / valgrind : An open-source memory debugger for GNU/Linux
media-gfx
media-gfx / tachyon : A portable, high performance parallel ray tracing system
media-libs
media-libs / Field3D : A library for storing voxel data
media-libs / vigra : C++ computer vision library emphasizing customizable algorithms and structures
sci-astronomy
sci-astronomy / montage : Toolkit for assembling FITS images into mosaics
sci-biology
sci-biology / abyss : Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
sci-biology / gibbs : Identify motifs, conserved regions, in DNA or protein sequences
sci-biology / hmmer : Sequence analysis using profile hidden Markov models
sci-biology / infernal : Inference of RNA alignments
sci-biology / meme : The MEME/MAST system - Motif discovery and search
sci-biology / mothur : A suite of algorithms for ecological bioinformatics
sci-biology / mrbayes : Bayesian Inference of Phylogeny
sci-biology / tree-puzzle : Maximum likelihood analysis for nucleotide, amino acid, and two-state data
sci-chemistry
sci-chemistry / apbs : Evaluation of electrostatic properties of nanoscale biomolecular systems
sci-chemistry / gromacs : The ultimate molecular dynamics simulation package
sci-chemistry / mpqc : The Massively Parallel Quantum Chemistry Program
sci-libs
sci-libs / adolc : Automatic differentiation system for C/C++
sci-libs / arpack : Arnoldi package library to solve large scale eigenvalue problems
sci-libs / cgnslib : CFD General Notation System standard library
sci-libs / fftw : Fast C library for the Discrete Fourier Transform
sci-libs / flann : Fast approximate nearest neighbor searches in high dimensional spaces
sci-libs / gerris : Gerris Flow Solver
sci-libs / hdf5 : General purpose library and file format for storing scientific data
sci-libs / hypre : Parallel matrix preconditioners library
sci-libs / ipopt : Interior-Point Optimizer for large-scale nonlinear optimization
sci-libs / libgeodecomp : An auto-parallelizing library to speed up computer simulations
sci-libs / libmed : A library to store and exchange meshed data or computation results
sci-libs / libsc : Support for parallel scientific applications
sci-libs / lis : Library of Iterative Solvers for Linear Systems
sci-libs / lrslib : Self-contained C implementation of the reverse search algorithm
sci-libs / mathgl : Math Graphics Library
sci-libs / mkl : Intel(R) Math Kernel Library: linear algebra, fft, math functions
sci-libs / mumps : MUltifrontal Massively Parallel sparse direct matrix Solver
sci-libs / netcdf : Scientific library and interface for array oriented data access
sci-libs / p4est : Scalable Algorithms for Parallel Adaptive Mesh Refinement on Forests of Octrees
sci-libs / parmetis : Parallel (MPI) unstructured graph partitioning library
sci-libs / pastix : Parallel solver for very large sparse linear systems
sci-libs / punc : Portable Understructure for Numerical Computing
sci-libs / scotch : Software for graph, mesh and hypergraph partitioning
sci-libs / spooles : SParse Object Oriented Linear Equations Solver
sci-libs / sundials : Suite of nonlinear solvers
sci-libs / tensorflow : Computation framework using data flow graphs for scalable machine learning
sci-mathematics
sci-mathematics / form : Symbolic Manipulation System
sci-mathematics / gretl : Regression, econometrics and time-series library
sci-mathematics / msieve : A C library implementing a suite of algorithms to factor large integers
sci-mathematics / xmds : XMDS - The eXtensible Multi-Dimensional Simulator
sci-physics
sci-physics / lammps : Large-scale Atomic/Molecular Massively Parallel Simulator
sci-physics / meep : Simulation software to model electromagnetic systems
sci-physics / reduze : Program for reducing Feynman integrals
sci-visualization
sci-visualization / paraview : Powerful scientific data visualization application
sci-visualization / visit : A software that delivers parallel interactive visualizations
sys-cluster
sys-cluster / charm : Message-passing parallel language and runtime system
sys-cluster / gasnet : Networking middleware for partitioned global address space (PGAS) language